Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0804 and Shew_0805 overlap by 4 nucleotides Shew_0805 and Shew_0806 overlap by 11 nucleotides Shew_0806 and Shew_0807 are separated by 748 nucleotides
Shew_0804: Shew_0804 - two component transcriptional regulator (RefSeq), at 917,298 to 918,002
_0804
Shew_0805: Shew_0805 - hypothetical protein (RefSeq), at 917,999 to 918,394
_0805
Shew_0806: Shew_0806 - MltA-interacting MipA family protein (RefSeq), at 918,384 to 919,229
_0806
Shew_0807: Shew_0807 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 919,978 to 925,095
_0807
Position (kb) 918
919
920 Strain fitness (log2 ratio) -1
0
1 at 917.463 kb on - strand, within Shew_0804 at 917.678 kb on + strand, within Shew_0804 at 917.720 kb on + strand, within Shew_0804 at 917.728 kb on - strand, within Shew_0804 at 917.810 kb on + strand, within Shew_0804 at 917.930 kb on + strand, within Shew_0804 at 918.201 kb on - strand, within Shew_0805 at 918.308 kb on - strand, within Shew_0805 at 918.367 kb on + strand at 918.835 kb on - strand, within Shew_0806 at 918.985 kb on + strand, within Shew_0806 at 919.075 kb on + strand, within Shew_0806 at 919.083 kb on + strand, within Shew_0806 at 919.230 kb on - strand at 919.355 kb on - strand at 919.620 kb on + strand at 919.966 kb on + strand at 920.029 kb on + strand at 920.140 kb on - strand at 920.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 917,463 - Shew_0804 0.23 -0.4 917,678 + Shew_0804 0.54 -0.1 917,720 + Shew_0804 0.60 +0.3 917,728 - Shew_0804 0.61 +0.3 917,810 + Shew_0804 0.73 -0.4 917,930 + Shew_0804 0.90 -0.5 918,201 - Shew_0805 0.51 -0.1 918,308 - Shew_0805 0.78 -0.1 918,367 + -0.1 918,835 - Shew_0806 0.53 +0.6 918,985 + Shew_0806 0.71 +0.7 919,075 + Shew_0806 0.82 +0.9 919,083 + Shew_0806 0.83 -0.3 919,230 - +0.1 919,355 - +0.2 919,620 + -0.1 919,966 + -0.5 920,029 + +0.1 920,140 - -0.0 920,140 - +0.4
Or see this region's nucleotide sequence