Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0771 and Shew_0772 are separated by 119 nucleotides Shew_0772 and Shew_0773 are separated by 138 nucleotides
Shew_0771: Shew_0771 - thiol:disulfide interchange protein DsbC (RefSeq), at 880,241 to 880,966
_0771
Shew_0772: Shew_0772 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 881,086 to 882,810
_0772
Shew_0773: Shew_0773 - fructose-1,6-bisphosphatase (RefSeq), at 882,949 to 883,938
_0773
Position (kb) 881
882
883 Strain fitness (log2 ratio) -1
0
1 at 880.377 kb on + strand, within Shew_0771 at 880.525 kb on - strand, within Shew_0771 at 880.550 kb on - strand, within Shew_0771 at 880.826 kb on - strand, within Shew_0771 at 880.860 kb on + strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771 at 880.868 kb on - strand, within Shew_0771 at 881.031 kb on + strand at 881.708 kb on + strand, within Shew_0772 at 881.900 kb on - strand, within Shew_0772 at 881.947 kb on - strand, within Shew_0772 at 882.102 kb on - strand, within Shew_0772 at 882.688 kb on + strand at 882.742 kb on - strand at 882.788 kb on - strand at 882.808 kb on - strand at 882.844 kb on - strand at 882.947 kb on + strand at 882.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 880,377 + Shew_0771 0.19 +0.1 880,525 - Shew_0771 0.39 -0.3 880,550 - Shew_0771 0.43 +0.3 880,826 - Shew_0771 0.81 -0.0 880,860 + Shew_0771 0.85 +0.1 880,868 - Shew_0771 0.86 -0.1 880,868 - Shew_0771 0.86 +0.1 881,031 + -0.4 881,708 + Shew_0772 0.36 -0.3 881,900 - Shew_0772 0.47 -1.1 881,947 - Shew_0772 0.50 -0.4 882,102 - Shew_0772 0.59 -0.7 882,688 + -0.3 882,742 - -0.1 882,788 - -0.2 882,808 - +0.2 882,844 - +0.0 882,947 + -0.1 882,954 + +0.5
Or see this region's nucleotide sequence