Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1574

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1573 and Dshi_1574 are separated by 61 nucleotidesDshi_1574 and Dshi_1575 overlap by 1 nucleotides Dshi_1573: Dshi_1573 - multi-sensor signal transduction histidine kinase (RefSeq), at 1,638,597 to 1,640,900 _1573 Dshi_1574: Dshi_1574 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,640,962 to 1,642,326 _1574 Dshi_1575: Dshi_1575 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,642,326 to 1,643,399 _1575 Position (kb) 1640 1641 1642 1643Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1639.995 kb on - strand, within Dshi_1573at 1640.813 kb on + strandat 1640.846 kb on + strandat 1640.939 kb on - strandat 1641.035 kb on + strandat 1641.086 kb on - strandat 1641.103 kb on + strand, within Dshi_1574at 1641.137 kb on - strand, within Dshi_1574at 1641.702 kb on - strand, within Dshi_1574at 1641.810 kb on - strand, within Dshi_1574at 1641.810 kb on - strand, within Dshi_1574at 1641.894 kb on - strand, within Dshi_1574at 1641.930 kb on + strand, within Dshi_1574at 1641.943 kb on - strand, within Dshi_1574at 1642.195 kb on - strandat 1642.266 kb on - strandat 1642.270 kb on + strandat 1642.278 kb on - strandat 1642.361 kb on + strandat 1642.451 kb on - strand, within Dshi_1575at 1642.528 kb on - strand, within Dshi_1575at 1642.702 kb on + strand, within Dshi_1575at 1642.721 kb on - strand, within Dshi_1575at 1642.777 kb on - strand, within Dshi_1575at 1642.847 kb on + strand, within Dshi_1575at 1642.897 kb on + strand, within Dshi_1575at 1642.928 kb on + strand, within Dshi_1575at 1642.944 kb on - strand, within Dshi_1575at 1643.010 kb on - strand, within Dshi_1575at 1643.090 kb on + strand, within Dshi_1575at 1643.104 kb on - strand, within Dshi_1575at 1643.129 kb on - strand, within Dshi_1575

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,639,995 - Dshi_1573 0.61 -2.2
1,640,813 + -1.7
1,640,846 + -3.1
1,640,939 - -0.9
1,641,035 + -2.5
1,641,086 - -4.1
1,641,103 + Dshi_1574 0.10 -2.3
1,641,137 - Dshi_1574 0.13 -2.7
1,641,702 - Dshi_1574 0.54 -0.4
1,641,810 - Dshi_1574 0.62 -2.9
1,641,810 - Dshi_1574 0.62 -2.4
1,641,894 - Dshi_1574 0.68 -3.5
1,641,930 + Dshi_1574 0.71 -3.9
1,641,943 - Dshi_1574 0.72 -2.4
1,642,195 - -3.2
1,642,266 - -2.8
1,642,270 + -2.8
1,642,278 - -2.9
1,642,361 + -4.1
1,642,451 - Dshi_1575 0.12 -2.8
1,642,528 - Dshi_1575 0.19 -1.4
1,642,702 + Dshi_1575 0.35 -3.8
1,642,721 - Dshi_1575 0.37 -2.5
1,642,777 - Dshi_1575 0.42 -2.2
1,642,847 + Dshi_1575 0.49 -2.8
1,642,897 + Dshi_1575 0.53 -0.4
1,642,928 + Dshi_1575 0.56 -2.0
1,642,944 - Dshi_1575 0.58 -1.4
1,643,010 - Dshi_1575 0.64 -2.4
1,643,090 + Dshi_1575 0.71 -1.0
1,643,104 - Dshi_1575 0.72 -1.3
1,643,129 - Dshi_1575 0.75 -0.0

Or see this region's nucleotide sequence