Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1467

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1466 and Dshi_1467 overlap by 13 nucleotidesDshi_1467 and Dshi_1468 are separated by 97 nucleotidesDshi_1468 and Dshi_1469 are separated by 102 nucleotides Dshi_1466: Dshi_1466 - GTP-binding protein Obg/CgtA (RefSeq), at 1,520,948 to 1,521,985 _1466 Dshi_1467: Dshi_1467 - glutamate 5-kinase (RefSeq), at 1,521,973 to 1,523,079 _1467 Dshi_1468: Dshi_1468 - hypothetical protein (RefSeq), at 1,523,177 to 1,523,812 _1468 Dshi_1469: Dshi_1469 - gamma-glutamyl phosphate reductase (RefSeq), at 1,523,915 to 1,525,180 _1469 Position (kb) 1521 1522 1523 1524Strain fitness (log2 ratio) -1 0 1at 1523.283 kb on - strand, within Dshi_1468at 1523.304 kb on - strand, within Dshi_1468at 1523.348 kb on - strand, within Dshi_1468at 1523.511 kb on + strand, within Dshi_1468at 1523.714 kb on + strand, within Dshi_1468at 1523.714 kb on + strand, within Dshi_1468at 1523.719 kb on + strand, within Dshi_1468at 1523.719 kb on + strand, within Dshi_1468at 1523.719 kb on + strand, within Dshi_1468at 1523.750 kb on + strandat 1523.759 kb on - strandat 1523.776 kb on + strandat 1523.786 kb on + strandat 1523.806 kb on + strandat 1523.923 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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1,523,283 - Dshi_1468 0.17 +0.2
1,523,304 - Dshi_1468 0.20 +0.4
1,523,348 - Dshi_1468 0.27 +0.5
1,523,511 + Dshi_1468 0.53 -0.1
1,523,714 + Dshi_1468 0.84 -0.1
1,523,714 + Dshi_1468 0.84 +0.2
1,523,719 + Dshi_1468 0.85 +0.4
1,523,719 + Dshi_1468 0.85 -1.2
1,523,719 + Dshi_1468 0.85 -0.6
1,523,750 + -0.3
1,523,759 - -0.2
1,523,776 + +0.3
1,523,786 + -0.2
1,523,806 + -0.0
1,523,923 - -1.4

Or see this region's nucleotide sequence