Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0144

Experiment: Uridine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0142 and Dshi_0143 are separated by 314 nucleotidesDshi_0143 and Dshi_0144 are separated by 34 nucleotidesDshi_0144 and Dshi_0145 are separated by 160 nucleotides Dshi_0142: Dshi_0142 - penicillin-binding protein, 1A family (RefSeq), at 140,693 to 142,882 _0142 Dshi_0143: Dshi_0143 - nitrogen regulatory protein P-II (RefSeq), at 143,197 to 143,535 _0143 Dshi_0144: Dshi_0144 - ammonium transporter (RefSeq), at 143,570 to 144,883 _0144 Dshi_0145: Dshi_0145 - Aspartate transaminase (RefSeq), at 145,044 to 146,222 _0145 Position (kb) 143 144 145Strain fitness (log2 ratio) -2 -1 0 1at 142.841 kb on - strandat 142.917 kb on + strandat 142.942 kb on - strandat 142.950 kb on - strandat 142.979 kb on - strandat 143.005 kb on - strandat 143.187 kb on + strandat 143.300 kb on - strand, within Dshi_0143at 143.743 kb on + strand, within Dshi_0144at 143.830 kb on - strand, within Dshi_0144at 143.921 kb on - strand, within Dshi_0144at 143.939 kb on + strand, within Dshi_0144at 144.199 kb on - strand, within Dshi_0144at 144.224 kb on - strand, within Dshi_0144at 144.240 kb on - strand, within Dshi_0144at 144.264 kb on + strand, within Dshi_0144at 144.304 kb on - strand, within Dshi_0144at 144.456 kb on - strand, within Dshi_0144at 144.472 kb on - strand, within Dshi_0144at 144.513 kb on + strand, within Dshi_0144at 144.570 kb on + strand, within Dshi_0144at 144.630 kb on + strand, within Dshi_0144at 144.677 kb on - strand, within Dshi_0144at 144.711 kb on - strand, within Dshi_0144at 144.761 kb on - strandat 144.761 kb on - strandat 144.869 kb on - strandat 144.885 kb on - strandat 144.949 kb on - strandat 144.949 kb on - strandat 144.956 kb on + strandat 144.964 kb on + strandat 144.988 kb on - strandat 145.037 kb on + strandat 145.258 kb on + strand, within Dshi_0145at 145.260 kb on - strand, within Dshi_0145at 145.316 kb on + strand, within Dshi_0145at 145.364 kb on + strandat 145.412 kb on - strand, within Dshi_0145at 145.522 kb on + strand, within Dshi_0145at 145.726 kb on + strand, within Dshi_0145

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (N)
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142,841 - -0.4
142,917 + +0.3
142,942 - +0.6
142,950 - +0.3
142,979 - -0.7
143,005 - -0.1
143,187 + -0.7
143,300 - Dshi_0143 0.30 +1.3
143,743 + Dshi_0144 0.13 -2.4
143,830 - Dshi_0144 0.20 -1.2
143,921 - Dshi_0144 0.27 -2.5
143,939 + Dshi_0144 0.28 +0.0
144,199 - Dshi_0144 0.48 -0.1
144,224 - Dshi_0144 0.50 +1.1
144,240 - Dshi_0144 0.51 -0.7
144,264 + Dshi_0144 0.53 +0.6
144,304 - Dshi_0144 0.56 +0.8
144,456 - Dshi_0144 0.67 -1.4
144,472 - Dshi_0144 0.69 +1.6
144,513 + Dshi_0144 0.72 -1.6
144,570 + Dshi_0144 0.76 -1.4
144,630 + Dshi_0144 0.81 -1.2
144,677 - Dshi_0144 0.84 -0.5
144,711 - Dshi_0144 0.87 -0.4
144,761 - -0.2
144,761 - -0.8
144,869 - +0.1
144,885 - -1.7
144,949 - -0.2
144,949 - +0.6
144,956 + -0.4
144,964 + -0.2
144,988 - -0.0
145,037 + -0.1
145,258 + Dshi_0145 0.18 -0.3
145,260 - Dshi_0145 0.18 +1.2
145,316 + Dshi_0145 0.23 -0.1
145,364 + +0.3
145,412 - Dshi_0145 0.31 +0.3
145,522 + Dshi_0145 0.41 -0.1
145,726 + Dshi_0145 0.58 +1.1

Or see this region's nucleotide sequence