Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_222

Experiment: Hans 100x vitamins

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_221 and Pf6N2E2_222 are separated by 2 nucleotidesPf6N2E2_222 and Pf6N2E2_223 overlap by 4 nucleotides Pf6N2E2_221 - RND efflux system, membrane fusion protein CmeA, at 279,239 to 280,432 _221 Pf6N2E2_222 - RND efflux system, inner membrane transporter CmeB, at 280,435 to 283,581 _222 Pf6N2E2_223 - RND efflux system, outer membrane lipoprotein CmeC, at 283,578 to 284,975 _223 Position (kb) 280 281 282 283 284Strain fitness (log2 ratio) -2 -1 0 1 2at 279.444 kb on + strandat 279.522 kb on - strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.542 kb on + strand, within Pf6N2E2_221at 279.543 kb on - strand, within Pf6N2E2_221at 279.758 kb on + strand, within Pf6N2E2_221at 279.758 kb on + strand, within Pf6N2E2_221at 279.758 kb on + strand, within Pf6N2E2_221at 279.759 kb on - strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.878 kb on + strand, within Pf6N2E2_221at 279.879 kb on - strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.882 kb on + strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.883 kb on - strand, within Pf6N2E2_221at 279.945 kb on + strand, within Pf6N2E2_221at 279.945 kb on + strand, within Pf6N2E2_221at 279.946 kb on - strand, within Pf6N2E2_221at 279.946 kb on - strand, within Pf6N2E2_221at 280.004 kb on + strand, within Pf6N2E2_221at 280.004 kb on + strand, within Pf6N2E2_221at 280.004 kb on + strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.005 kb on - strand, within Pf6N2E2_221at 280.118 kb on + strand, within Pf6N2E2_221at 280.118 kb on + strand, within Pf6N2E2_221at 280.118 kb on + strand, within Pf6N2E2_221at 280.119 kb on - strand, within Pf6N2E2_221at 280.119 kb on - strand, within Pf6N2E2_221at 280.119 kb on - strand, within Pf6N2E2_221at 280.579 kb on + strandat 280.579 kb on + strandat 280.663 kb on + strandat 280.663 kb on + strandat 280.663 kb on + strandat 280.663 kb on + strandat 280.663 kb on + strandat 280.663 kb on + strandat 280.663 kb on + strandat 280.664 kb on - strandat 280.664 kb on - strandat 280.664 kb on - strandat 280.664 kb on - strandat 280.664 kb on - strandat 280.664 kb on - strandat 280.664 kb on - strandat 280.904 kb on - strand, within Pf6N2E2_222at 280.904 kb on - strand, within Pf6N2E2_222at 280.904 kb on - strand, within Pf6N2E2_222at 281.258 kb on - strand, within Pf6N2E2_222at 281.258 kb on - strand, within Pf6N2E2_222at 281.383 kb on + strand, within Pf6N2E2_222at 281.383 kb on + strand, within Pf6N2E2_222at 281.481 kb on + strand, within Pf6N2E2_222at 281.482 kb on - strand, within Pf6N2E2_222at 281.614 kb on - strand, within Pf6N2E2_222at 281.839 kb on + strand, within Pf6N2E2_222at 282.016 kb on + strand, within Pf6N2E2_222at 282.016 kb on + strand, within Pf6N2E2_222at 282.016 kb on + strand, within Pf6N2E2_222at 282.016 kb on + strand, within Pf6N2E2_222at 282.016 kb on + strand, within Pf6N2E2_222at 282.016 kb on + strand, within Pf6N2E2_222at 282.017 kb on - strand, within Pf6N2E2_222at 282.017 kb on - strand, within Pf6N2E2_222at 282.018 kb on + strand, within Pf6N2E2_222at 282.019 kb on - strand, within Pf6N2E2_222at 282.019 kb on - strand, within Pf6N2E2_222at 282.071 kb on - strand, within Pf6N2E2_222at 282.071 kb on - strand, within Pf6N2E2_222at 282.170 kb on + strand, within Pf6N2E2_222at 282.388 kb on - strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.700 kb on + strand, within Pf6N2E2_222at 282.701 kb on - strand, within Pf6N2E2_222at 282.701 kb on - strand, within Pf6N2E2_222at 282.701 kb on - strand, within Pf6N2E2_222at 282.701 kb on - strand, within Pf6N2E2_222at 282.701 kb on - strand, within Pf6N2E2_222at 282.742 kb on + strand, within Pf6N2E2_222at 282.742 kb on + strand, within Pf6N2E2_222at 282.743 kb on - strand, within Pf6N2E2_222at 282.743 kb on - strand, within Pf6N2E2_222at 282.859 kb on + strand, within Pf6N2E2_222at 282.860 kb on - strand, within Pf6N2E2_222at 282.884 kb on - strand, within Pf6N2E2_222at 283.018 kb on + strand, within Pf6N2E2_222at 283.019 kb on - strand, within Pf6N2E2_222at 283.057 kb on + strand, within Pf6N2E2_222at 283.080 kb on - strand, within Pf6N2E2_222at 283.204 kb on + strand, within Pf6N2E2_222at 283.382 kb on + strandat 283.650 kb on + strandat 283.650 kb on + strandat 283.651 kb on - strandat 283.651 kb on - strandat 283.959 kb on + strand, within Pf6N2E2_223at 283.959 kb on + strand, within Pf6N2E2_223at 283.959 kb on + strand, within Pf6N2E2_223at 283.959 kb on + strand, within Pf6N2E2_223at 283.986 kb on + strand, within Pf6N2E2_223at 283.987 kb on - strand, within Pf6N2E2_223at 283.987 kb on - strand, within Pf6N2E2_223at 283.987 kb on - strand, within Pf6N2E2_223at 283.987 kb on - strand, within Pf6N2E2_223at 284.043 kb on + strand, within Pf6N2E2_223at 284.044 kb on - strand, within Pf6N2E2_223at 284.181 kb on + strand, within Pf6N2E2_223at 284.181 kb on + strand, within Pf6N2E2_223at 284.249 kb on + strand, within Pf6N2E2_223at 284.367 kb on + strand, within Pf6N2E2_223

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Hans 100x vitamins
remove
279,444 + +0.1
279,522 - Pf6N2E2_221 0.24 +0.8
279,542 + Pf6N2E2_221 0.25 -0.7
279,542 + Pf6N2E2_221 0.25 -0.1
279,542 + Pf6N2E2_221 0.25 -0.2
279,542 + Pf6N2E2_221 0.25 +1.4
279,542 + Pf6N2E2_221 0.25 +0.9
279,543 - Pf6N2E2_221 0.25 +0.4
279,758 + Pf6N2E2_221 0.43 -0.3
279,758 + Pf6N2E2_221 0.43 -1.0
279,758 + Pf6N2E2_221 0.43 -0.3
279,759 - Pf6N2E2_221 0.44 +1.4
279,878 + Pf6N2E2_221 0.54 -0.5
279,878 + Pf6N2E2_221 0.54 +0.4
279,878 + Pf6N2E2_221 0.54 -0.1
279,878 + Pf6N2E2_221 0.54 -0.9
279,878 + Pf6N2E2_221 0.54 +0.1
279,878 + Pf6N2E2_221 0.54 -0.6
279,878 + Pf6N2E2_221 0.54 -0.3
279,879 - Pf6N2E2_221 0.54 +0.1
279,882 + Pf6N2E2_221 0.54 +0.6
279,882 + Pf6N2E2_221 0.54 +0.2
279,882 + Pf6N2E2_221 0.54 -0.5
279,882 + Pf6N2E2_221 0.54 -0.1
279,883 - Pf6N2E2_221 0.54 -1.6
279,883 - Pf6N2E2_221 0.54 -0.8
279,883 - Pf6N2E2_221 0.54 -0.2
279,883 - Pf6N2E2_221 0.54 +0.7
279,883 - Pf6N2E2_221 0.54 +0.0
279,883 - Pf6N2E2_221 0.54 +0.8
279,883 - Pf6N2E2_221 0.54 +1.4
279,945 + Pf6N2E2_221 0.59 -0.7
279,945 + Pf6N2E2_221 0.59 +0.5
279,946 - Pf6N2E2_221 0.59 -1.3
279,946 - Pf6N2E2_221 0.59 +0.4
280,004 + Pf6N2E2_221 0.64 +0.4
280,004 + Pf6N2E2_221 0.64 +0.5
280,004 + Pf6N2E2_221 0.64 -0.1
280,005 - Pf6N2E2_221 0.64 +0.4
280,005 - Pf6N2E2_221 0.64 -0.0
280,005 - Pf6N2E2_221 0.64 +0.1
280,005 - Pf6N2E2_221 0.64 -0.4
280,118 + Pf6N2E2_221 0.74 +0.1
280,118 + Pf6N2E2_221 0.74 -1.2
280,118 + Pf6N2E2_221 0.74 -0.3
280,119 - Pf6N2E2_221 0.74 -0.5
280,119 - Pf6N2E2_221 0.74 -1.1
280,119 - Pf6N2E2_221 0.74 -0.6
280,579 + +0.0
280,579 + +0.6
280,663 + -0.4
280,663 + -1.6
280,663 + -0.1
280,663 + -0.1
280,663 + -1.3
280,663 + +0.3
280,663 + -0.6
280,664 - -0.4
280,664 - -0.0
280,664 - +1.3
280,664 - -0.2
280,664 - -0.7
280,664 - +0.2
280,664 - -0.0
280,904 - Pf6N2E2_222 0.15 +0.8
280,904 - Pf6N2E2_222 0.15 -0.3
280,904 - Pf6N2E2_222 0.15 -0.7
281,258 - Pf6N2E2_222 0.26 -0.1
281,258 - Pf6N2E2_222 0.26 -0.2
281,383 + Pf6N2E2_222 0.30 +0.5
281,383 + Pf6N2E2_222 0.30 -1.7
281,481 + Pf6N2E2_222 0.33 -2.6
281,482 - Pf6N2E2_222 0.33 -0.6
281,614 - Pf6N2E2_222 0.37 -0.4
281,839 + Pf6N2E2_222 0.45 -0.9
282,016 + Pf6N2E2_222 0.50 +2.1
282,016 + Pf6N2E2_222 0.50 -0.3
282,016 + Pf6N2E2_222 0.50 -1.4
282,016 + Pf6N2E2_222 0.50 +0.7
282,016 + Pf6N2E2_222 0.50 +0.3
282,016 + Pf6N2E2_222 0.50 +0.9
282,017 - Pf6N2E2_222 0.50 -0.7
282,017 - Pf6N2E2_222 0.50 -0.5
282,018 + Pf6N2E2_222 0.50 +0.4
282,019 - Pf6N2E2_222 0.50 +0.7
282,019 - Pf6N2E2_222 0.50 -1.3
282,071 - Pf6N2E2_222 0.52 +0.0
282,071 - Pf6N2E2_222 0.52 -0.5
282,170 + Pf6N2E2_222 0.55 -1.4
282,388 - Pf6N2E2_222 0.62 -0.1
282,700 + Pf6N2E2_222 0.72 -0.7
282,700 + Pf6N2E2_222 0.72 -1.6
282,700 + Pf6N2E2_222 0.72 +0.8
282,700 + Pf6N2E2_222 0.72 -0.5
282,700 + Pf6N2E2_222 0.72 -0.6
282,700 + Pf6N2E2_222 0.72 -0.4
282,700 + Pf6N2E2_222 0.72 +0.7
282,700 + Pf6N2E2_222 0.72 -0.8
282,700 + Pf6N2E2_222 0.72 -0.1
282,700 + Pf6N2E2_222 0.72 -0.9
282,701 - Pf6N2E2_222 0.72 -0.5
282,701 - Pf6N2E2_222 0.72 -0.1
282,701 - Pf6N2E2_222 0.72 +0.1
282,701 - Pf6N2E2_222 0.72 +1.0
282,701 - Pf6N2E2_222 0.72 +0.0
282,742 + Pf6N2E2_222 0.73 -0.5
282,742 + Pf6N2E2_222 0.73 +0.5
282,743 - Pf6N2E2_222 0.73 -0.8
282,743 - Pf6N2E2_222 0.73 +0.7
282,859 + Pf6N2E2_222 0.77 +0.2
282,860 - Pf6N2E2_222 0.77 -0.6
282,884 - Pf6N2E2_222 0.78 -0.0
283,018 + Pf6N2E2_222 0.82 +0.7
283,019 - Pf6N2E2_222 0.82 -1.4
283,057 + Pf6N2E2_222 0.83 +0.1
283,080 - Pf6N2E2_222 0.84 -0.3
283,204 + Pf6N2E2_222 0.88 -0.5
283,382 + -0.2
283,650 + -1.9
283,650 + +0.1
283,651 - -0.3
283,651 - -0.8
283,959 + Pf6N2E2_223 0.27 +0.1
283,959 + Pf6N2E2_223 0.27 -0.0
283,959 + Pf6N2E2_223 0.27 +0.9
283,959 + Pf6N2E2_223 0.27 +0.9
283,986 + Pf6N2E2_223 0.29 +0.0
283,987 - Pf6N2E2_223 0.29 +1.1
283,987 - Pf6N2E2_223 0.29 -0.1
283,987 - Pf6N2E2_223 0.29 +0.6
283,987 - Pf6N2E2_223 0.29 +0.1
284,043 + Pf6N2E2_223 0.33 +0.7
284,044 - Pf6N2E2_223 0.33 -0.6
284,181 + Pf6N2E2_223 0.43 +0.1
284,181 + Pf6N2E2_223 0.43 +0.2
284,249 + Pf6N2E2_223 0.48 +0.3
284,367 + Pf6N2E2_223 0.56 +0.2

Or see this region's nucleotide sequence