Strain Fitness in Pantoea sp. MT58 around IAI47_19335

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
90,402	+				-0.8
90,402	+				-0.5
90,403	-				-1.5
90,403	-				-1.1
90,419	+				-0.5
90,419	+				-1.1
90,489	+				-1.4
90,490	-				-0.5
90,530	-				-1.5
90,557	+				+1.5
90,601	+				-0.3
90,695	+				+0.4
90,696	-				-1.6
90,696	-				-2.7
90,719	+				+2.2
90,719	+				-1.5
90,720	-				+0.2
90,726	+				+1.8
90,726	+				-2.2
90,726	+				-0.5
90,726	+				-1.1
90,727	-				+1.5
90,727	-				-1.3
90,727	-				+0.4
90,727	-				+1.4
90,727	-				-0.1
90,727	-				-1.1
90,727	-				+0.5
90,727	-				+0.1
90,727	-				-1.8
90,775	-				+1.5
90,800	+		IAI47_19330	0.11	+1.8
90,800	+		IAI47_19330	0.11	-2.9
90,801	-		IAI47_19330	0.12	+1.8
90,825	+		IAI47_19330	0.19	+0.1
90,825	+		IAI47_19330	0.19	+0.0
90,826	-		IAI47_19330	0.19	+0.3
90,884	+		IAI47_19330	0.36	-1.9
90,897	+		IAI47_19330	0.39	-0.5
90,898	-		IAI47_19330	0.40	+1.6
90,951	+		IAI47_19330	0.55	-1.9
90,951	+		IAI47_19330	0.55	+1.1
90,952	-		IAI47_19330	0.55	+0.4
90,952	-		IAI47_19330	0.55	+1.0
90,968	+		IAI47_19330	0.60	+0.9
90,969	-		IAI47_19330	0.60	+1.8
90,975	+		IAI47_19330	0.62	-0.2
90,975	+		IAI47_19330	0.62	+0.0
90,976	-		IAI47_19330	0.62	-1.1
90,993	+		IAI47_19330	0.67	-1.5
90,993	+		IAI47_19330	0.67	+3.1
90,993	+		IAI47_19330	0.67	+0.9
91,006	+		IAI47_19330	0.71	-1.0
91,007	-		IAI47_19330	0.71	-1.8
91,007	-		IAI47_19330	0.71	-1.8
91,007	-		IAI47_19330	0.71	+0.8
91,007	-		IAI47_19330	0.71	+1.6
91,032	+		IAI47_19330	0.78	+1.0
91,032	+		IAI47_19330	0.78	-0.3
91,043	+		IAI47_19330	0.81	-0.0
91,052	-		IAI47_19330	0.84	+0.5
91,106	-				-1.7
91,126	+				+1.5
91,217	-				-1.3
91,225	+				-2.4
91,282	-				-0.7
91,282	-				+1.5
91,309	+				-0.1
91,309	+				+1.3
91,310	-				-0.8
91,310	-				-1.7
91,315	+				+2.4
91,316	-				+1.3
91,325	+				+1.8
91,325	+				+1.2
91,362	+				+0.1
91,363	-				-2.7
91,369	+				-2.4
91,370	-				+0.4
91,370	-				-0.9
91,374	+				+0.5
91,374	+				-1.3
91,384	-				+1.2
91,384	-				+0.1
91,392	-				+0.3
91,392	-				+0.7
91,395	+				+2.3
91,395	+				-0.6
91,396	-				-1.3
91,400	+				-0.2
91,400	+				-1.1
91,400	+				+0.2
91,400	+				+1.0
91,400	+				-1.8
91,401	-				-1.8
91,401	-				+0.3
91,401	-				+3.7
91,405	-				-2.7
91,462	+				+0.7
91,462	+				-0.9
91,463	-				-1.6
91,463	-				-1.7
91,463	-				+0.3
91,463	-				+0.6
91,463	-				+0.1
91,463	-				-0.3
91,463	-				-0.5
91,520	+		IAI47_19335	0.11	-0.6
91,521	-		IAI47_19335	0.11	-0.5
91,521	-		IAI47_19335	0.11	+0.4
91,521	-		IAI47_19335	0.11	-1.4
91,521	-		IAI47_19335	0.11	+0.5
91,521	-		IAI47_19335	0.11	+2.6
91,539	+		IAI47_19335	0.12	+0.5
91,540	-		IAI47_19335	0.12	-0.5
91,549	-		IAI47_19335	0.13	-0.5
91,555	-		IAI47_19335	0.14	+0.8
91,607	+		IAI47_19335	0.18	+0.2
91,607	+		IAI47_19335	0.18	+0.5
91,607	+		IAI47_19335	0.18	+0.2
91,607	+		IAI47_19335	0.18	+1.8
91,608	-		IAI47_19335	0.18	+3.0
91,636	-		IAI47_19335	0.20	+1.1
91,636	-		IAI47_19335	0.20	+0.6
91,636	-		IAI47_19335	0.20	-2.9
91,746	+		IAI47_19335	0.30	+0.4
91,747	-		IAI47_19335	0.30	+0.5
91,747	-		IAI47_19335	0.30	-1.3
91,772	+		IAI47_19335	0.32	+0.2
91,772	+		IAI47_19335	0.32	-1.7
91,772	+		IAI47_19335	0.32	-0.8
91,772	+		IAI47_19335	0.32	+0.1
91,772	+		IAI47_19335	0.32	-3.0
91,772	+		IAI47_19335	0.32	-0.1
91,772	+		IAI47_19335	0.32	-0.3
91,772	+		IAI47_19335	0.32	-0.5
91,772	+		IAI47_19335	0.32	+1.1
91,772	+		IAI47_19335	0.32	-1.1
91,773	-		IAI47_19335	0.32	+0.1
91,773	-		IAI47_19335	0.32	+0.2
91,773	-		IAI47_19335	0.32	+1.0
91,773	-		IAI47_19335	0.32	+1.2
91,888	-		IAI47_19335	0.41	-0.2
91,924	+		IAI47_19335	0.44	-0.9
91,925	-		IAI47_19335	0.44	-2.7
91,967	+		IAI47_19335	0.48	-0.6
91,968	-		IAI47_19335	0.48	-2.4
91,989	+		IAI47_19335	0.50	-2.6
91,989	+		IAI47_19335	0.50	-1.1
91,989	+		IAI47_19335	0.50	-0.0
91,990	-		IAI47_19335	0.50	-2.9
91,990	-		IAI47_19335	0.50	-1.7
91,990	-		IAI47_19335	0.50	-0.0
91,997	+		IAI47_19335	0.50	+2.4
92,001	+		IAI47_19335	0.51	+0.3
92,002	-		IAI47_19335	0.51	-3.7
92,013	+		IAI47_19335	0.52	-0.2
92,014	-		IAI47_19335	0.52	+1.5
92,041	+		IAI47_19335	0.54	+1.1
92,043	+		IAI47_19335	0.54	+0.5
92,044	-		IAI47_19335	0.54	+0.2
92,044	-		IAI47_19335	0.54	+0.7
92,044	-		IAI47_19335	0.54	+0.7
92,056	-		IAI47_19335	0.55	-0.5
92,080	+		IAI47_19335	0.57	-0.8
92,081	-		IAI47_19335	0.57	-1.7
92,081	-		IAI47_19335	0.57	-2.2
92,081	-		IAI47_19335	0.57	-1.8
92,081	-		IAI47_19335	0.57	+1.1
92,104	-		IAI47_19335	0.59	-1.9
92,104	-		IAI47_19335	0.59	-0.5
92,163	-		IAI47_19335	0.64	-0.1
92,163	-		IAI47_19335	0.64	-0.1
92,201	+		IAI47_19335	0.67	+0.5
92,201	+		IAI47_19335	0.67	-0.1
92,201	+		IAI47_19335	0.67	-0.4
92,201	+		IAI47_19335	0.67	-0.8
92,201	+		IAI47_19335	0.67	-2.9
92,201	+		IAI47_19335	0.67	+0.7
92,201	+		IAI47_19335	0.67	-1.7
92,201	+		IAI47_19335	0.67	+0.3
92,201	+		IAI47_19335	0.67	-0.2
92,201	+		IAI47_19335	0.67	+1.6
92,201	+		IAI47_19335	0.67	+0.2
92,201	+		IAI47_19335	0.67	+0.2
92,201	+		IAI47_19335	0.67	-1.1
92,201	+		IAI47_19335	0.67	-0.9
92,202	-		IAI47_19335	0.67	-0.6
92,202	-		IAI47_19335	0.67	-1.2
92,202	-		IAI47_19335	0.67	+0.1
92,202	-		IAI47_19335	0.67	+1.8
92,202	-		IAI47_19335	0.67	-0.6
92,202	-		IAI47_19335	0.67	+1.5
92,202	-		IAI47_19335	0.67	-0.2
92,202	-		IAI47_19335	0.67	+0.8
92,203	+		IAI47_19335	0.68	+2.1
92,203	+		IAI47_19335	0.68	-2.0
92,203	+		IAI47_19335	0.68	-1.7
92,203	+		IAI47_19335	0.68	-1.8
92,203	+		IAI47_19335	0.68	-0.5
92,203	+		IAI47_19335	0.68	-1.5
92,203	+		IAI47_19335	0.68	+1.9
92,203	+		IAI47_19335	0.68	-1.8
92,204	-		IAI47_19335	0.68	+0.7
92,204	-		IAI47_19335	0.68	-1.9
92,204	-		IAI47_19335	0.68	+0.1
92,204	-		IAI47_19335	0.68	+0.3
92,204	-		IAI47_19335	0.68	-1.7
92,204	-		IAI47_19335	0.68	-0.1
92,210	+		IAI47_19335	0.68	-0.8
92,210	+		IAI47_19335	0.68	-0.8
92,210	+		IAI47_19335	0.68	-0.5
92,247	+		IAI47_19335	0.71	+1.8
92,247	+		IAI47_19335	0.71	+0.1
92,248	-		IAI47_19335	0.71	+0.5
92,248	-		IAI47_19335	0.71	-1.8
92,248	-		IAI47_19335	0.71	-1.8
92,248	-		IAI47_19335	0.71	+1.1
92,248	-		IAI47_19335	0.71	+2.3
92,248	-		IAI47_19335	0.71	+0.6
92,269	-		IAI47_19335	0.73	-2.3
92,278	+		IAI47_19335	0.74	-0.8
92,279	-		IAI47_19335	0.74	+0.0
92,279	-		IAI47_19335	0.74	-1.9
92,279	-		IAI47_19335	0.74	+0.5
92,279	-		IAI47_19335	0.74	-0.9
92,368	+		IAI47_19335	0.81	-0.8
92,368	+		IAI47_19335	0.81	+0.1
92,368	+		IAI47_19335	0.81	-0.7
92,369	-		IAI47_19335	0.81	-1.8
92,369	-		IAI47_19335	0.81	+0.7
92,411	+		IAI47_19335	0.85	-1.1
92,412	-		IAI47_19335	0.85	-2.1
92,412	-		IAI47_19335	0.85	-1.1
92,439	+		IAI47_19335	0.87	-2.4
92,439	+		IAI47_19335	0.87	+0.5
92,440	-		IAI47_19335	0.87	-0.8
92,476	-				+0.3
92,497	+				+1.2
92,497	+				-0.5
92,498	-				+2.3
92,498	-				+0.5
92,498	-				+0.1
92,499	+				+0.7
92,499	+				+1.7
92,499	+				-1.5
92,499	+				+1.5
92,500	-				-1.9
92,505	+				+2.8
92,536	+				-1.4
92,537	-				-0.1
92,672	+				+2.5
92,672	+				+0.3
92,672	+				+1.1
92,673	-				+1.1
92,673	-				-0.1
92,673	-				-0.4
92,673	-				-0.7
92,673	-				-0.1
92,673	-				+1.8
92,686	+				-1.0
92,687	-				+1.3
92,690	+				+0.3
92,690	+				+0.0
92,690	+				-1.3
92,691	-				-0.1
92,691	-				-0.5
92,691	-				-2.9
92,718	-				+0.8
92,718	-				-0.5
92,718	-				+0.3
92,721	+				-1.1
92,721	+				-1.1
92,721	+				+1.3
92,721	+				-1.1
92,722	-				+0.9
92,722	-				-0.2
92,722	-				-0.2
92,778	+				-1.7
92,787	+				-0.5
92,789	+				+0.5
92,789	+				-0.8
92,789	+				-1.5
92,798	+				+1.2
92,804	+				+0.2
92,805	-				+1.2
92,805	-				-0.2
92,852	+				+0.4
92,856	-				+1.0
92,857	+				+1.1
92,891	+				+0.5
92,891	+				+0.1
92,892	-				+0.5
92,938	+				-0.4
92,963	+				+0.3
92,963	+				+0.0
92,963	+				+3.2
92,963	+				-2.1
92,963	+				-1.3
92,963	+				-0.3
92,963	+				-0.7
92,963	+				+0.7
92,964	-				+0.8
92,964	-				-2.8
92,964	-				+1.0
92,964	-				-1.2
92,968	+				+0.9
92,972	+				-0.2
92,973	-				-1.1
93,009	-				-0.2
93,009	-				-0.1
93,009	-				-1.3
93,011	+				+0.5
93,011	+				-2.1
93,011	+				+0.8
93,011	+				-1.9
93,012	-				-0.8
93,012	-				-0.6
93,012	-				-0.8
93,012	-				+0.9
93,015	+				+2.6
93,015	+				-0.2
93,015	+				+2.5
93,015	+				+0.9
93,015	+				-0.7
93,015	+				-0.5
93,015	+				+0.8
93,016	-				+3.1
93,016	-				-0.4
93,016	-				+2.1
93,020	+				+2.3
93,020	+				-1.1
93,020	+				-1.0
93,020	+				+0.3
93,020	+				-0.1
93,020	+				+0.5
93,020	+				-1.3
93,020	+				+2.0
93,020	+				+1.3
93,020	+				-1.1
93,020	+				+1.1
93,020	+				+1.1
93,020	+				+0.4
93,020	+				+0.7
93,020	+				+1.3
93,020	+				+0.0
93,020	+				+2.3
93,020	+				+0.5
93,020	+				+1.5
93,020	+				-1.0
93,020	+				+0.5
93,020	+				+0.3
93,021	-				-0.5
93,021	-				-2.7
93,021	-				-2.0
93,021	-				+1.1
93,021	-				-0.5
93,021	-				+0.4
93,021	-				+0.3
93,021	-				+0.7
93,021	-				+0.5
93,021	-				-1.1
93,021	-				-1.1
93,021	-				-1.1
93,021	-				+1.1
93,024	+				+0.1
93,052	+				+2.2
93,052	+				+0.7
93,053	-				-1.3
93,053	-				+0.9
93,069	-				-0.5
93,097	-				+0.1
93,114	+				+1.0
93,138	-				-0.5
93,208	+		IAI47_19340	0.18	+0.3
93,208	+		IAI47_19340	0.18	-2.4
93,208	+		IAI47_19340	0.18	+0.3
93,208	+		IAI47_19340	0.18	-0.7
93,208	+		IAI47_19340	0.18	-1.9
93,208	+		IAI47_19340	0.18	-0.2
93,209	-		IAI47_19340	0.18	-2.4
93,209	-		IAI47_19340	0.18	-0.7
93,209	-		IAI47_19340	0.18	+0.7
93,209	-		IAI47_19340	0.18	+0.7
93,209	-		IAI47_19340	0.18	+0.9
93,211	+		IAI47_19340	0.18	-0.4
93,211	+		IAI47_19340	0.18	-0.1
93,211	+		IAI47_19340	0.18	+2.3
93,211	+		IAI47_19340	0.18	-2.3
93,211	+		IAI47_19340	0.18	+0.1
93,211	+		IAI47_19340	0.18	+2.1
93,211	+		IAI47_19340	0.18	-2.2
93,212	-		IAI47_19340	0.18	-2.5
93,212	-		IAI47_19340	0.18	+1.8
93,212	-		IAI47_19340	0.18	-1.7
93,212	-		IAI47_19340	0.18	-0.5
93,212	-		IAI47_19340	0.18	-1.3
93,212	-		IAI47_19340	0.18	+1.5
93,212	-		IAI47_19340	0.18	-1.1
93,212	-		IAI47_19340	0.18	+0.2
93,212	-		IAI47_19340	0.18	-1.7
93,213	+		IAI47_19340	0.19	-0.2
93,213	+		IAI47_19340	0.19	-1.1
93,213	+		IAI47_19340	0.19	-1.5
93,214	-		IAI47_19340	0.19	+0.5
93,214	-		IAI47_19340	0.19	-0.3
93,214	-		IAI47_19340	0.19	-0.1
93,214	-		IAI47_19340	0.19	+1.5
93,214	-		IAI47_19340	0.19	-0.0
93,263	-		IAI47_19340	0.27	+2.7
93,293	+		IAI47_19340	0.31	-0.3
93,293	+		IAI47_19340	0.31	-0.8
93,294	-		IAI47_19340	0.31	-1.5
93,294	-		IAI47_19340	0.31	-2.2
93,374	-		IAI47_19340	0.44	+2.2
93,374	-		IAI47_19340	0.44	-1.1
93,374	-		IAI47_19340	0.44	-2.5
93,461	+		IAI47_19340	0.58	+0.5
93,461	+		IAI47_19340	0.58	+2.6
93,461	+		IAI47_19340	0.58	-0.7
93,462	-		IAI47_19340	0.58	-0.5
93,464	+		IAI47_19340	0.59	+1.2
93,464	+		IAI47_19340	0.59	+2.9
93,464	+		IAI47_19340	0.59	-1.5
93,465	-		IAI47_19340	0.59	-0.2
93,467	+		IAI47_19340	0.59	+0.3
93,467	+		IAI47_19340	0.59	+0.7
93,498	+		IAI47_19340	0.64	-1.1
93,528	+		IAI47_19340	0.69	+0.9
93,537	+		IAI47_19340	0.70	+0.5
93,579	+		IAI47_19340	0.77	+0.5
93,580	-		IAI47_19340	0.77	+0.9