Strain Fitness in Pantoea sp. MT58 around IAI47_13890

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,940,302	+		IAI47_13885	0.63	-3.2
2,940,302	+		IAI47_13885	0.63	-0.8
2,940,302	+		IAI47_13885	0.63	+0.8
2,940,302	+		IAI47_13885	0.63	-1.0
2,940,727	+				-1.5
2,940,781	+				-1.0
2,940,781	+				+0.7
2,940,973	+		IAI47_13890	0.19	-1.0
2,940,973	+		IAI47_13890	0.19	+0.6
2,940,976	+		IAI47_13890	0.20	+0.8
2,940,976	+		IAI47_13890	0.20	-1.8
2,940,976	+		IAI47_13890	0.20	-1.0
2,940,977	-		IAI47_13890	0.20	-0.0
2,940,997	+		IAI47_13890	0.21	-0.3
2,940,997	+		IAI47_13890	0.21	+2.4
2,941,057	+		IAI47_13890	0.26	-1.9
2,941,057	+		IAI47_13890	0.26	-1.3
2,941,057	+		IAI47_13890	0.26	-1.6
2,941,079	+		IAI47_13890	0.28	-1.3
2,941,079	+		IAI47_13890	0.28	+0.2
2,941,080	-		IAI47_13890	0.28	-0.4
2,941,080	-		IAI47_13890	0.28	-1.9
2,941,080	-		IAI47_13890	0.28	-0.6
2,941,220	-		IAI47_13890	0.40	-1.6
2,941,236	-		IAI47_13890	0.41	+1.3
2,941,237	+		IAI47_13890	0.41	-1.9
2,941,237	+		IAI47_13890	0.41	-0.8
2,941,237	+		IAI47_13890	0.41	-1.0
2,941,238	-		IAI47_13890	0.41	-3.4
2,941,238	-		IAI47_13890	0.41	+1.7
2,941,247	-		IAI47_13890	0.42	-1.6
2,941,247	-		IAI47_13890	0.42	-2.9
2,941,247	-		IAI47_13890	0.42	-1.3
2,941,247	-		IAI47_13890	0.42	+1.4
2,941,247	-		IAI47_13890	0.42	-2.8
2,941,349	+		IAI47_13890	0.50	+0.3
2,941,350	-		IAI47_13890	0.50	+1.1
2,941,350	-		IAI47_13890	0.50	-1.3
2,941,350	-		IAI47_13890	0.50	-3.2
2,941,350	-		IAI47_13890	0.50	-1.8
2,941,395	+		IAI47_13890	0.54	-2.1
2,941,420	+		IAI47_13890	0.56	+1.0
2,941,420	+		IAI47_13890	0.56	-0.5
2,941,427	-		IAI47_13890	0.57	-0.1
2,941,435	+		IAI47_13890	0.57	-0.5
2,941,435	+		IAI47_13890	0.57	-1.5
2,941,435	+		IAI47_13890	0.57	-2.6
2,941,436	-		IAI47_13890	0.57	-0.4
2,941,633	+		IAI47_13890	0.73	-0.8
2,941,633	+		IAI47_13890	0.73	-1.1
2,941,697	+		IAI47_13890	0.79	-0.2
2,941,697	+		IAI47_13890	0.79	-1.2
2,941,711	+		IAI47_13890	0.80	-0.0
2,941,711	+		IAI47_13890	0.80	+1.8
2,941,712	-		IAI47_13890	0.80	-2.7
2,941,712	-		IAI47_13890	0.80	-0.8
2,941,736	-		IAI47_13890	0.82	-2.3
2,941,816	+		IAI47_13890	0.88	+0.5
2,941,828	-		IAI47_13890	0.89	-2.5
2,941,922	-				+0.1
2,941,955	+				-0.1
2,941,955	+				+1.4
2,941,955	+				+1.8
2,941,955	+				-1.0
2,941,956	-				-0.3
2,941,960	+				+1.8
2,941,961	-				+1.3
2,941,961	-				+0.8
2,941,961	-				-2.3
2,941,961	-				+0.6
2,941,996	+				-1.3
2,941,996	+				-0.6
2,941,996	+				-1.9
2,941,996	+				-1.3
2,941,996	+				+0.7
2,941,996	+				-1.3
2,941,996	+				+1.4
2,941,996	+				+0.8
2,941,997	-				-0.6
2,941,997	-				-1.2
2,941,997	-				+0.3
2,941,997	-				+1.5
2,941,997	-				-1.6
2,942,005	+				+1.1
2,942,006	-				+0.2
2,942,013	+				-1.2
2,942,013	+				+1.3
2,942,026	-				+1.8
2,942,126	+		IAI47_13895	0.17	-0.2
2,942,126	+		IAI47_13895	0.17	-0.4
2,942,126	+		IAI47_13895	0.17	+0.2
2,942,126	+		IAI47_13895	0.17	-0.6
2,942,126	+		IAI47_13895	0.17	-1.5
2,942,126	+		IAI47_13895	0.17	+1.6
2,942,127	-		IAI47_13895	0.17	-0.3
2,942,127	-		IAI47_13895	0.17	+2.2
2,942,201	+		IAI47_13895	0.27	+2.3
2,942,201	+		IAI47_13895	0.27	-1.7
2,942,201	+		IAI47_13895	0.27	+0.7
2,942,201	+		IAI47_13895	0.27	+2.3
2,942,202	-		IAI47_13895	0.27	-0.1
2,942,202	-		IAI47_13895	0.27	-2.6
2,942,202	-		IAI47_13895	0.27	+1.4
2,942,202	-		IAI47_13895	0.27	+1.4
2,942,203	+		IAI47_13895	0.27	-1.3
2,942,204	-		IAI47_13895	0.27	-2.3
2,942,258	+		IAI47_13895	0.35	+1.6
2,942,258	+		IAI47_13895	0.35	+2.2
2,942,259	-		IAI47_13895	0.35	-0.7
2,942,259	-		IAI47_13895	0.35	-1.5
2,942,259	-		IAI47_13895	0.35	+0.8
2,942,259	-		IAI47_13895	0.35	-0.3
2,942,259	-		IAI47_13895	0.35	+1.4
2,942,259	-		IAI47_13895	0.35	-0.9
2,942,259	-		IAI47_13895	0.35	+1.2
2,942,259	-		IAI47_13895	0.35	+2.5
2,942,259	-		IAI47_13895	0.35	+0.9
2,942,294	+		IAI47_13895	0.39	+0.6
2,942,294	+		IAI47_13895	0.39	+1.2
2,942,295	-		IAI47_13895	0.40	+0.1
2,942,295	-		IAI47_13895	0.40	-0.8
2,942,295	-		IAI47_13895	0.40	-0.2
2,942,295	-		IAI47_13895	0.40	+0.0
2,942,295	-		IAI47_13895	0.40	-0.0
2,942,295	-		IAI47_13895	0.40	+1.8
2,942,308	+		IAI47_13895	0.41	+0.2
2,942,309	-		IAI47_13895	0.41	-0.3
2,942,314	+		IAI47_13895	0.42	+0.9
2,942,314	+		IAI47_13895	0.42	+0.2
2,942,314	+		IAI47_13895	0.42	+1.1
2,942,314	+		IAI47_13895	0.42	+0.6
2,942,315	-		IAI47_13895	0.42	+1.1
2,942,380	+		IAI47_13895	0.51	+0.6
2,942,380	+		IAI47_13895	0.51	+1.0
2,942,380	+		IAI47_13895	0.51	+1.0
2,942,380	+		IAI47_13895	0.51	+0.3
2,942,380	+		IAI47_13895	0.51	+0.2
2,942,380	+		IAI47_13895	0.51	-0.8
2,942,380	+		IAI47_13895	0.51	+1.8
2,942,381	-		IAI47_13895	0.51	+3.2
2,942,381	-		IAI47_13895	0.51	-3.0
2,942,381	-		IAI47_13895	0.51	-0.6
2,942,381	-		IAI47_13895	0.51	-1.0
2,942,381	-		IAI47_13895	0.51	-1.6
2,942,453	-		IAI47_13895	0.61	-0.6
2,942,453	-		IAI47_13895	0.61	+1.0
2,942,453	-		IAI47_13895	0.61	-1.0
2,942,453	-		IAI47_13895	0.61	+0.5
2,942,453	-		IAI47_13895	0.61	-0.7
2,942,453	-		IAI47_13895	0.61	-1.3
2,942,534	+		IAI47_13895	0.71	+1.1
2,942,535	-		IAI47_13895	0.71	-2.3
2,942,535	-		IAI47_13895	0.71	+0.8
2,942,615	-		IAI47_13895	0.82	-0.8
2,942,683	+				+1.5
2,942,684	-				+0.5
2,942,692	+				+2.3
2,942,692	+				+1.8
2,942,692	+				-1.9
2,942,692	+				-1.9
2,942,692	+				+2.2
2,942,692	+				+1.8
2,942,693	-				-1.0
2,942,693	-				+0.2
2,942,693	-				+1.2
2,942,693	-				-2.5
2,942,693	-				-0.0
2,942,693	-				+0.2
2,942,693	-				+0.6
2,942,693	-				+0.2
2,942,693	-				+0.2
2,942,718	-				-0.4
2,942,718	-				+0.1
2,942,718	-				+0.2
2,942,718	-				+0.3
2,942,734	+				+0.2
2,942,762	-				+0.6
2,942,776	+				-1.8
2,942,776	+				-0.2