Strain Fitness in Pantoea sp. MT58 around IAI47_13880

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,937,718	+		IAI47_13875	0.67	-1.5
2,937,718	+		IAI47_13875	0.67	+1.8
2,937,718	+		IAI47_13875	0.67	-0.5
2,937,719	-		IAI47_13875	0.67	-0.1
2,937,719	-		IAI47_13875	0.67	-0.0
2,937,719	-		IAI47_13875	0.67	-1.6
2,937,798	+		IAI47_13875	0.71	-1.6
2,937,798	+		IAI47_13875	0.71	+3.2
2,937,798	+		IAI47_13875	0.71	-0.2
2,937,799	-		IAI47_13875	0.71	+2.2
2,937,799	-		IAI47_13875	0.71	+0.5
2,937,799	-		IAI47_13875	0.71	-2.1
2,937,799	-		IAI47_13875	0.71	-1.5
2,937,799	-		IAI47_13875	0.71	+0.9
2,937,799	-		IAI47_13875	0.71	-2.8
2,937,799	-		IAI47_13875	0.71	-1.6
2,937,799	-		IAI47_13875	0.71	-0.2
2,937,799	-		IAI47_13875	0.71	+0.6
2,937,879	+		IAI47_13875	0.75	+0.9
2,937,879	+		IAI47_13875	0.75	-0.2
2,937,879	+		IAI47_13875	0.75	-2.3
2,937,879	+		IAI47_13875	0.75	-0.9
2,937,879	+		IAI47_13875	0.75	-2.0
2,937,879	+		IAI47_13875	0.75	-2.6
2,937,879	+		IAI47_13875	0.75	+1.2
2,937,879	+		IAI47_13875	0.75	+1.4
2,937,879	+		IAI47_13875	0.75	-0.2
2,937,879	+		IAI47_13875	0.75	+0.4
2,937,879	+		IAI47_13875	0.75	+1.0
2,937,880	-		IAI47_13875	0.75	+0.2
2,937,880	-		IAI47_13875	0.75	+0.2
2,937,880	-		IAI47_13875	0.75	-0.2
2,937,880	-		IAI47_13875	0.75	-0.6
2,937,880	-		IAI47_13875	0.75	-1.8
2,937,880	-		IAI47_13875	0.75	+0.8
2,937,889	+		IAI47_13875	0.75	-0.2
2,937,992	-		IAI47_13875	0.80	-0.0
2,937,992	-		IAI47_13875	0.80	+0.7
2,937,993	+		IAI47_13875	0.80	+1.4
2,937,993	+		IAI47_13875	0.80	+1.8
2,937,993	+		IAI47_13875	0.80	-2.7
2,937,993	+		IAI47_13875	0.80	+1.2
2,937,993	+		IAI47_13875	0.80	-0.2
2,937,993	+		IAI47_13875	0.80	+0.2
2,937,993	+		IAI47_13875	0.80	-2.3
2,937,994	-		IAI47_13875	0.80	+0.4
2,937,994	-		IAI47_13875	0.80	+0.8
2,937,994	-		IAI47_13875	0.80	-1.6
2,937,994	-		IAI47_13875	0.80	+0.6
2,937,994	-		IAI47_13875	0.80	+0.7
2,937,994	-		IAI47_13875	0.80	-1.5
2,938,065	-		IAI47_13875	0.84	-1.5
2,938,065	-		IAI47_13875	0.84	+1.7
2,938,171	+		IAI47_13875	0.89	+0.3
2,938,172	-		IAI47_13875	0.89	+0.6
2,938,172	-		IAI47_13875	0.89	-1.1
2,938,253	+				+0.4
2,938,254	-				-0.9
2,938,254	-				-0.7
2,938,316	+				-1.1
2,938,316	+				-0.5
2,938,316	+				+0.1
2,938,316	+				-0.4
2,938,316	+				+0.3
2,938,317	-				-1.7
2,938,317	-				+0.5
2,938,317	-				-0.7
2,938,317	-				+0.1
2,938,317	-				-0.7
2,938,317	-				-0.5
2,938,317	-				+0.4
2,938,317	-				-0.3
2,938,317	-				+0.7
2,938,319	+				-0.7
2,938,319	+				-0.1
2,938,320	-				+0.3
2,938,320	-				-0.7
2,938,320	-				-0.2
2,938,320	-				+0.6
2,938,320	-				-0.5
2,938,320	-				-1.5
2,938,376	+				-1.6
2,938,376	+				+0.8
2,938,376	+				-1.1
2,938,376	+				-0.4
2,938,377	-				-0.5
2,938,380	+				+0.6
2,938,381	-				+0.4
2,938,381	-				-0.7
2,938,381	-				+0.1
2,938,385	+				+1.5
2,938,385	+				+0.3
2,938,385	+				-1.5
2,938,385	+				+0.5
2,938,385	+				-0.5
2,938,385	+				+0.2
2,938,385	+				+1.7
2,938,385	+				+1.7
2,938,385	+				-0.7
2,938,386	-				+0.5
2,938,386	-				+1.4
2,938,386	-				+1.0
2,938,386	-				-2.6
2,938,386	-				+1.8
2,938,390	+				+0.3
2,938,390	+				-0.5
2,938,390	+				+0.8
2,938,391	-				+0.6
2,938,391	-				+0.3
2,938,391	-				-2.2
2,938,391	-				+0.3
2,938,391	-				-0.9
2,938,391	-				+0.2
2,938,391	-				-0.5
2,938,403	+				-1.3
2,938,433	+				+2.6
2,938,433	+				+0.3
2,938,433	+				-1.0
2,938,433	+				+0.2
2,938,434	-				+1.4
2,938,434	-				+0.7
2,938,434	-				-0.7
2,938,434	-				+0.7
2,938,434	-				+0.7
2,938,434	-				+1.0
2,938,434	-				+0.2
2,938,463	+				+2.8
2,938,466	+				+0.4
2,938,466	+				-0.5
2,938,466	+				-2.1
2,938,466	+				-0.5
2,938,466	+				+1.0
2,938,467	-				+1.3
2,938,467	-				+0.7
2,938,467	-				+0.9
2,938,467	-				-1.3
2,938,467	-				-0.7
2,938,467	-				+2.4
2,938,475	+				-1.3
2,938,475	+				+2.4
2,938,476	-				-0.6
2,938,476	-				+0.1
2,938,492	+				-3.0
2,938,492	+				-1.9
2,938,492	+				-1.3
2,938,493	-				+0.1
2,938,493	-				+0.1
2,938,493	-				-0.3
2,938,493	-				-1.4
2,938,493	-				-2.7
2,938,493	-				+0.3
2,938,499	-				-1.5
2,938,644	+				+2.3
2,938,669	+				-0.5
2,938,669	+				-1.0
2,938,670	-				-1.3
2,938,682	+				-1.3
2,938,705	-				-2.8
2,938,735	-				-1.3
2,938,752	+				-0.7
2,938,774	+				-0.2
2,938,774	+				+1.7
2,938,774	+				+1.2
2,938,774	+				-1.0
2,938,774	+				+0.3
2,938,774	+				+0.7
2,938,774	+				-1.4
2,938,774	+				-0.7
2,938,774	+				+1.6
2,938,775	-				-2.6
2,938,775	-				+0.4
2,938,775	-				-1.5
2,938,777	+				-0.1
2,938,780	+				-0.2
2,938,798	+		IAI47_13880	0.10	-0.4
2,938,813	+		IAI47_13880	0.12	+0.2
2,938,813	+		IAI47_13880	0.12	-1.2
2,938,814	-		IAI47_13880	0.12	-1.6
2,938,814	-		IAI47_13880	0.12	-1.2
2,938,862	+		IAI47_13880	0.18	+0.6
2,938,862	+		IAI47_13880	0.18	+0.7
2,938,863	-		IAI47_13880	0.18	-0.7
2,938,863	-		IAI47_13880	0.18	-0.7
2,938,863	-		IAI47_13880	0.18	+0.2
2,938,863	-		IAI47_13880	0.18	+1.4
2,938,885	+		IAI47_13880	0.21	-3.0
2,938,886	-		IAI47_13880	0.21	-1.3
2,938,906	+		IAI47_13880	0.23	-1.2
2,938,906	+		IAI47_13880	0.23	-1.2
2,938,907	-		IAI47_13880	0.24	-1.7
2,938,907	-		IAI47_13880	0.24	-1.6
2,938,907	-		IAI47_13880	0.24	-1.6
2,938,907	-		IAI47_13880	0.24	+1.3
2,938,907	-		IAI47_13880	0.24	-0.2
2,938,907	-		IAI47_13880	0.24	-1.3
2,938,928	-		IAI47_13880	0.26	-0.2
2,938,937	+		IAI47_13880	0.27	+2.1
2,938,937	+		IAI47_13880	0.27	+2.5
2,938,937	+		IAI47_13880	0.27	+1.1
2,938,937	+		IAI47_13880	0.27	+1.0
2,938,937	+		IAI47_13880	0.27	+1.3
2,938,937	+		IAI47_13880	0.27	-2.0
2,938,937	+		IAI47_13880	0.27	-0.5
2,938,937	+		IAI47_13880	0.27	+0.8
2,938,938	-		IAI47_13880	0.27	+1.0
2,938,938	-		IAI47_13880	0.27	+1.0
2,938,938	-		IAI47_13880	0.27	-1.2
2,938,938	-		IAI47_13880	0.27	+0.8
2,938,970	+		IAI47_13880	0.31	+3.2
2,938,970	+		IAI47_13880	0.31	-1.6
2,938,970	+		IAI47_13880	0.31	-0.2
2,938,981	+		IAI47_13880	0.33	-1.6
2,938,981	+		IAI47_13880	0.33	-3.0
2,938,981	+		IAI47_13880	0.33	-0.6
2,938,981	+		IAI47_13880	0.33	+0.3
2,938,982	-		IAI47_13880	0.33	-2.1
2,938,982	-		IAI47_13880	0.33	+0.7
2,938,982	-		IAI47_13880	0.33	+0.1
2,938,982	-		IAI47_13880	0.33	-2.7
2,938,982	-		IAI47_13880	0.33	-2.6
2,938,986	-		IAI47_13880	0.33	-3.2
2,939,012	-		IAI47_13880	0.37	-2.3
2,939,012	-		IAI47_13880	0.37	-0.7
2,939,026	+		IAI47_13880	0.38	+0.5
2,939,027	-		IAI47_13880	0.39	-1.0
2,939,044	+		IAI47_13880	0.41	-1.3
2,939,044	+		IAI47_13880	0.41	-1.5
2,939,045	-		IAI47_13880	0.41	-0.7
2,939,079	-		IAI47_13880	0.45	-1.6
2,939,194	+		IAI47_13880	0.59	-2.6
2,939,263	+		IAI47_13880	0.68	+2.0
2,939,263	+		IAI47_13880	0.68	-0.4
2,939,263	+		IAI47_13880	0.68	+1.3
2,939,263	+		IAI47_13880	0.68	+0.8
2,939,263	+		IAI47_13880	0.68	+0.6
2,939,263	+		IAI47_13880	0.68	+2.6
2,939,263	+		IAI47_13880	0.68	+0.2
2,939,263	+		IAI47_13880	0.68	-1.7
2,939,263	+		IAI47_13880	0.68	+0.3
2,939,264	-		IAI47_13880	0.68	-0.5
2,939,264	-		IAI47_13880	0.68	+0.8
2,939,267	+		IAI47_13880	0.69	-2.0
2,939,267	+		IAI47_13880	0.69	+0.7
2,939,267	+		IAI47_13880	0.69	+1.1
2,939,267	+		IAI47_13880	0.69	+1.8
2,939,267	+		IAI47_13880	0.69	+2.1
2,939,268	-		IAI47_13880	0.69	-1.0
2,939,268	-		IAI47_13880	0.69	-2.6
2,939,268	-		IAI47_13880	0.69	+0.0
2,939,268	-		IAI47_13880	0.69	+0.5
2,939,268	-		IAI47_13880	0.69	+0.5
2,939,268	-		IAI47_13880	0.69	-1.9
2,939,275	+		IAI47_13880	0.70	+0.8
2,939,276	-		IAI47_13880	0.70	+0.6
2,939,291	-		IAI47_13880	0.72	-1.6
2,939,338	+		IAI47_13880	0.77	+1.0
2,939,338	+		IAI47_13880	0.77	-0.3
2,939,339	-		IAI47_13880	0.78	-0.7
2,939,339	-		IAI47_13880	0.78	+0.0
2,939,383	+		IAI47_13880	0.83	+0.0
2,939,383	+		IAI47_13880	0.83	-0.7
2,939,383	+		IAI47_13880	0.83	+0.9
2,939,383	+		IAI47_13880	0.83	-2.2
2,939,383	+		IAI47_13880	0.83	+0.3
2,939,383	+		IAI47_13880	0.83	+0.5
2,939,383	+		IAI47_13880	0.83	+1.1
2,939,383	+		IAI47_13880	0.83	+1.2
2,939,383	+		IAI47_13880	0.83	-1.9
2,939,383	+		IAI47_13880	0.83	-2.1
2,939,383	+		IAI47_13880	0.83	+0.4
2,939,383	+		IAI47_13880	0.83	+0.4
2,939,383	+		IAI47_13880	0.83	+0.4
2,939,383	+		IAI47_13880	0.83	-2.2
2,939,384	-		IAI47_13880	0.83	-0.4
2,939,384	-		IAI47_13880	0.83	+1.8
2,939,384	-		IAI47_13880	0.83	-1.5
2,939,384	-		IAI47_13880	0.83	-2.4
2,939,384	-		IAI47_13880	0.83	-0.2
2,939,384	-		IAI47_13880	0.83	-0.2
2,939,384	-		IAI47_13880	0.83	-0.2
2,939,384	-		IAI47_13880	0.83	-0.5
2,939,384	-		IAI47_13880	0.83	+1.3
2,939,384	-		IAI47_13880	0.83	-2.6
2,939,477	+				-0.5
2,939,477	+				+1.5
2,939,503	+				+3.2
2,939,503	+				-0.0
2,939,516	+				+1.3
2,939,517	-				+0.2
2,939,543	+				-0.5
2,939,544	-				+0.7
2,939,544	-				-1.2
2,939,544	-				-2.3
2,939,544	-				-0.4
2,939,584	+				-0.3
2,939,584	+				+0.7
2,939,584	+				-1.6
2,939,584	+				-0.5
2,939,584	+				+1.5
2,939,591	+				-1.9
2,939,594	+				-1.5
2,940,302	+		IAI47_13885	0.63	-3.2
2,940,302	+		IAI47_13885	0.63	-0.8
2,940,302	+		IAI47_13885	0.63	+0.8
2,940,302	+		IAI47_13885	0.63	-1.0