Strain Fitness in Pantoea sp. MT58 around IAI47_07745

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,641,344	+				-1.8
1,641,345	-				+4.5
1,641,348	+				-0.1
1,641,360	+				-1.3
1,641,360	+				+1.2
1,641,361	-				-0.1
1,641,386	+				-0.7
1,641,386	+				+1.3
1,641,386	+				+1.1
1,641,387	-				-2.1
1,641,388	+				+1.0
1,641,408	+				-2.7
1,641,408	+				-2.5
1,641,447	-				-1.4
1,641,447	-				-0.9
1,641,461	+				+0.3
1,641,462	-				-0.7
1,641,482	+				+2.8
1,641,483	-				-1.1
1,641,483	-				+0.9
1,641,483	-				-0.1
1,641,483	-				-2.0
1,641,522	-				-0.4
1,641,525	+				-0.1
1,641,525	+				-0.4
1,641,539	+		IAI47_07740	0.10	+0.3
1,641,539	+		IAI47_07740	0.10	+0.8
1,641,540	-		IAI47_07740	0.11	-1.9
1,641,563	+		IAI47_07740	0.14	+1.4
1,641,563	+		IAI47_07740	0.14	-0.9
1,641,563	+		IAI47_07740	0.14	-1.4
1,641,564	-		IAI47_07740	0.14	+0.4
1,641,564	-		IAI47_07740	0.14	-2.9
1,641,564	-		IAI47_07740	0.14	-0.6
1,641,590	+		IAI47_07740	0.18	+2.3
1,641,590	+		IAI47_07740	0.18	+1.1
1,641,591	-		IAI47_07740	0.18	-0.3
1,641,606	+		IAI47_07740	0.20	+0.1
1,641,607	-		IAI47_07740	0.20	+0.3
1,641,607	-		IAI47_07740	0.20	-1.2
1,641,607	-		IAI47_07740	0.20	-2.7
1,641,607	-		IAI47_07740	0.20	-0.3
1,641,658	+		IAI47_07740	0.27	-0.9
1,641,659	-		IAI47_07740	0.27	+0.6
1,641,659	-		IAI47_07740	0.27	-0.6
1,641,663	+		IAI47_07740	0.28	-1.7
1,641,663	+		IAI47_07740	0.28	-1.4
1,641,664	-		IAI47_07740	0.28	+0.7
1,641,664	-		IAI47_07740	0.28	+0.1
1,641,664	-		IAI47_07740	0.28	+1.9
1,641,664	-		IAI47_07740	0.28	-0.6
1,641,707	-		IAI47_07740	0.34	-2.1
1,641,746	+		IAI47_07740	0.39	-0.6
1,641,747	-		IAI47_07740	0.39	-1.7
1,641,806	+		IAI47_07740	0.48	+1.9
1,641,807	-		IAI47_07740	0.48	-0.9
1,641,861	+		IAI47_07740	0.55	+1.1
1,641,861	+		IAI47_07740	0.55	-0.6
1,641,861	+		IAI47_07740	0.55	-0.1
1,641,861	+		IAI47_07740	0.55	-1.9
1,641,861	+		IAI47_07740	0.55	-2.9
1,641,862	-		IAI47_07740	0.56	+0.1
1,641,862	-		IAI47_07740	0.56	-2.4
1,641,960	+		IAI47_07740	0.69	-0.6
1,641,960	+		IAI47_07740	0.69	+1.2
1,641,960	+		IAI47_07740	0.69	+0.7
1,641,960	+		IAI47_07740	0.69	+1.1
1,641,960	+		IAI47_07740	0.69	+0.3
1,641,960	+		IAI47_07740	0.69	+0.9
1,641,960	+		IAI47_07740	0.69	-0.3
1,641,961	-		IAI47_07740	0.69	-2.4
1,641,961	-		IAI47_07740	0.69	+0.4
1,641,973	+		IAI47_07740	0.71	+1.5
1,641,973	+		IAI47_07740	0.71	+1.5
1,641,973	+		IAI47_07740	0.71	-0.1
1,641,973	+		IAI47_07740	0.71	-0.1
1,641,974	-		IAI47_07740	0.71	-0.9
1,641,974	-		IAI47_07740	0.71	+0.4
1,641,974	-		IAI47_07740	0.71	+0.9
1,641,974	-		IAI47_07740	0.71	+0.1
1,641,998	+		IAI47_07740	0.75	-0.6
1,641,998	+		IAI47_07740	0.75	-2.8
1,641,998	+		IAI47_07740	0.75	-3.0
1,641,999	-		IAI47_07740	0.75	-1.2
1,641,999	-		IAI47_07740	0.75	-2.3
1,642,002	+		IAI47_07740	0.75	-1.0
1,642,085	+		IAI47_07740	0.87	-3.2
1,642,085	+		IAI47_07740	0.87	+0.2
1,642,088	+		IAI47_07740	0.87	-1.4
1,642,089	-		IAI47_07740	0.87	+0.4
1,642,089	-		IAI47_07740	0.87	+0.1
1,642,089	-		IAI47_07740	0.87	+1.3
1,642,113	+				+1.5
1,642,114	-				+0.1
1,642,114	-				-0.1
1,642,148	+				+0.1
1,642,148	+				+0.1
1,642,148	+				-0.4
1,642,148	+				-0.1
1,642,148	+				-0.0
1,642,149	-				-1.3
1,642,149	-				+0.1
1,642,149	-				-0.6
1,642,149	-				+0.5
1,642,149	-				-1.6
1,642,149	-				-0.9
1,642,149	-				-0.4
1,642,151	+				-0.8
1,642,151	+				-0.5
1,642,151	+				-1.3
1,642,151	+				+1.2
1,642,151	+				-1.7
1,642,151	+				+2.0
1,642,152	-				-0.4
1,642,152	-				-0.3
1,642,152	-				-0.1
1,642,152	-				+2.3
1,642,152	-				-1.3
1,642,152	-				-1.7
1,642,152	-				-2.4
1,642,152	-				-0.9
1,642,358	+		IAI47_07745	0.23	-1.4
1,642,359	-		IAI47_07745	0.23	+0.7
1,642,504	-		IAI47_07745	0.41	-0.5
1,642,504	-		IAI47_07745	0.41	+1.1
1,642,507	+		IAI47_07745	0.41	-1.0
1,642,507	+		IAI47_07745	0.41	+0.9
1,642,507	+		IAI47_07745	0.41	-0.3
1,642,507	+		IAI47_07745	0.41	+0.7
1,642,507	+		IAI47_07745	0.41	+0.1
1,642,508	-		IAI47_07745	0.41	-0.6
1,642,508	-		IAI47_07745	0.41	-0.2
1,642,508	-		IAI47_07745	0.41	+0.7
1,642,508	-		IAI47_07745	0.41	+0.7
1,642,508	-		IAI47_07745	0.41	-2.7
1,642,508	-		IAI47_07745	0.41	-2.6
1,642,508	-		IAI47_07745	0.41	-2.0
1,642,508	-		IAI47_07745	0.41	-0.4
1,642,546	+		IAI47_07745	0.46	+1.4
1,642,547	-		IAI47_07745	0.46	-1.1
1,642,615	+		IAI47_07745	0.54	-0.5
1,642,616	-		IAI47_07745	0.54	+1.0
1,642,642	+		IAI47_07745	0.58	-0.5
1,642,688	-		IAI47_07745	0.63	+0.3
1,642,701	+		IAI47_07745	0.65	-2.4
1,642,702	-		IAI47_07745	0.65	-0.1
1,642,740	+		IAI47_07745	0.70	-2.0
1,642,741	-		IAI47_07745	0.70	+1.5
1,642,746	+		IAI47_07745	0.70	+1.0
1,642,747	-		IAI47_07745	0.71	-0.4
1,642,799	+		IAI47_07745	0.77	-1.3
1,642,799	+		IAI47_07745	0.77	-0.3
1,642,800	-		IAI47_07745	0.77	+0.4
1,642,830	+		IAI47_07745	0.81	+1.3
1,642,917	+				+0.6
1,642,942	+				-0.4
1,642,942	+				+1.2
1,642,942	+				+0.1
1,642,942	+				+2.6
1,642,943	-				+1.7
1,642,943	-				-2.0
1,642,943	-				-2.1
1,642,943	-				+0.1
1,642,951	+				+1.7
1,642,952	-				-0.4
1,642,952	-				+2.1
1,642,952	-				-1.6
1,642,999	+				-0.1
1,643,000	-				+0.6
1,643,004	+				-2.7
1,643,005	-				-1.2
1,643,014	+				+0.1
1,643,014	+				+0.7
1,643,014	+				-1.3
1,643,014	+				+2.0
1,643,015	-				-0.7
1,643,015	-				-2.7
1,643,071	+				-1.3
1,643,092	+				+0.1
1,643,092	+				+2.4
1,643,093	-				-1.0
1,643,093	-				+0.5
1,643,093	-				-0.6
1,643,093	-				+1.1
1,643,114	-				-2.2
1,643,114	-				+0.4
1,643,143	+				+1.8
1,643,166	+				+0.0
1,643,226	+		IAI47_07750	0.13	+1.7
1,643,351	-		IAI47_07750	0.30	+0.6
1,643,364	+		IAI47_07750	0.32	+2.3
1,643,364	+		IAI47_07750	0.32	+1.1
1,643,364	+		IAI47_07750	0.32	+3.7
1,643,364	+		IAI47_07750	0.32	-1.6
1,643,364	+		IAI47_07750	0.32	+1.7
1,643,364	+		IAI47_07750	0.32	+0.2
1,643,364	+		IAI47_07750	0.32	-1.4
1,643,364	+		IAI47_07750	0.32	+2.3
1,643,365	-		IAI47_07750	0.32	+1.5
1,643,365	-		IAI47_07750	0.32	-2.3
1,643,365	-		IAI47_07750	0.32	+1.7
1,643,365	-		IAI47_07750	0.32	-3.0
1,643,371	-		IAI47_07750	0.33	+2.0
1,643,452	+		IAI47_07750	0.44	-2.2
1,643,564	+		IAI47_07750	0.60	+2.6
1,643,638	+		IAI47_07750	0.70	+0.6
1,643,681	+		IAI47_07750	0.76	+1.7
1,643,796	+				-0.6
1,643,797	-				+0.5
1,643,847	+				+1.4
1,643,847	+				+1.0
1,643,848	-				+1.7
1,643,848	-				-1.3