Strain Fitness in Shewanella loihica PV-4 around Shew_0951

Experiment: LB 25C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0950 and Shew_0951 are separated by 319 nucleotidesShew_0951 and Shew_0952 are separated by 99 nucleotides Shew_0950: Shew_0950 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 1,091,279 to 1,092,577 _0950 Shew_0951: Shew_0951 - response regulator receiver modulated diguanylate phosphodiesterase (RefSeq), at 1,092,897 to 1,094,096 _0951 Shew_0952: Shew_0952 - peptidase M24 (RefSeq), at 1,094,196 to 1,095,983 _0952 Position (kb) 1092 1093 1094 1095Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1091.970 kb on - strand, within Shew_0950at 1092.290 kb on - strand, within Shew_0950at 1092.658 kb on + strandat 1092.792 kb on - strandat 1092.831 kb on + strandat 1093.121 kb on + strand, within Shew_0951at 1093.319 kb on - strand, within Shew_0951at 1093.500 kb on + strand, within Shew_0951at 1093.559 kb on - strand, within Shew_0951at 1093.581 kb on - strand, within Shew_0951at 1093.817 kb on + strand, within Shew_0951at 1093.965 kb on - strand, within Shew_0951at 1094.070 kb on - strandat 1094.070 kb on - strandat 1094.177 kb on + strandat 1094.212 kb on + strandat 1094.362 kb on - strandat 1094.987 kb on + strand, within Shew_0952

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 25C
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1,091,970 - Shew_0950 0.53 -3.1
1,092,290 - Shew_0950 0.78 -3.8
1,092,658 + -3.6
1,092,792 - +0.6
1,092,831 + +0.1
1,093,121 + Shew_0951 0.19 +0.5
1,093,319 - Shew_0951 0.35 -0.3
1,093,500 + Shew_0951 0.50 +0.0
1,093,559 - Shew_0951 0.55 +0.0
1,093,581 - Shew_0951 0.57 +0.3
1,093,817 + Shew_0951 0.77 -0.1
1,093,965 - Shew_0951 0.89 +0.3
1,094,070 - +0.1
1,094,070 - +1.2
1,094,177 + -0.1
1,094,212 + +0.2
1,094,362 - +0.1
1,094,987 + Shew_0952 0.44 +0.5

Or see this region's nucleotide sequence