Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1575

Experiment: Adenine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1574 and Dshi_1575 overlap by 1 nucleotidesDshi_1575 and Dshi_1576 overlap by 4 nucleotides Dshi_1574: Dshi_1574 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,640,962 to 1,642,326 _1574 Dshi_1575: Dshi_1575 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 1,642,326 to 1,643,399 _1575 Dshi_1576: Dshi_1576 - putative TIM-barrel protein, nifR3 family (RefSeq), at 1,643,396 to 1,644,397 _1576 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -3 -2 -1 0 1at 1641.702 kb on - strand, within Dshi_1574at 1641.810 kb on - strand, within Dshi_1574at 1641.810 kb on - strand, within Dshi_1574at 1641.894 kb on - strand, within Dshi_1574at 1641.930 kb on + strand, within Dshi_1574at 1641.943 kb on - strand, within Dshi_1574at 1642.195 kb on - strandat 1642.266 kb on - strandat 1642.270 kb on + strandat 1642.278 kb on - strandat 1642.361 kb on + strandat 1642.451 kb on - strand, within Dshi_1575at 1642.528 kb on - strand, within Dshi_1575at 1642.702 kb on + strand, within Dshi_1575at 1642.721 kb on - strand, within Dshi_1575at 1642.777 kb on - strand, within Dshi_1575at 1642.847 kb on + strand, within Dshi_1575at 1642.897 kb on + strand, within Dshi_1575at 1642.928 kb on + strand, within Dshi_1575at 1642.944 kb on - strand, within Dshi_1575at 1643.010 kb on - strand, within Dshi_1575at 1643.090 kb on + strand, within Dshi_1575at 1643.104 kb on - strand, within Dshi_1575at 1643.129 kb on - strand, within Dshi_1575at 1643.386 kb on - strandat 1643.548 kb on - strand, within Dshi_1576at 1643.622 kb on - strand, within Dshi_1576at 1643.632 kb on - strand, within Dshi_1576at 1643.764 kb on - strand, within Dshi_1576at 1643.805 kb on + strand, within Dshi_1576at 1643.940 kb on - strand, within Dshi_1576at 1644.103 kb on - strand, within Dshi_1576at 1644.107 kb on - strand, within Dshi_1576at 1644.132 kb on + strand, within Dshi_1576at 1644.140 kb on - strand, within Dshi_1576at 1644.158 kb on + strand, within Dshi_1576at 1644.213 kb on + strand, within Dshi_1576at 1644.224 kb on + strand, within Dshi_1576at 1644.245 kb on - strand, within Dshi_1576at 1644.299 kb on - strandat 1644.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine (N)
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1,641,702 - Dshi_1574 0.54 -0.6
1,641,810 - Dshi_1574 0.62 -2.3
1,641,810 - Dshi_1574 0.62 -1.6
1,641,894 - Dshi_1574 0.68 -0.9
1,641,930 + Dshi_1574 0.71 -1.7
1,641,943 - Dshi_1574 0.72 -0.7
1,642,195 - -0.8
1,642,266 - -0.5
1,642,270 + -2.0
1,642,278 - -1.9
1,642,361 + -1.4
1,642,451 - Dshi_1575 0.12 -1.3
1,642,528 - Dshi_1575 0.19 -1.6
1,642,702 + Dshi_1575 0.35 -2.4
1,642,721 - Dshi_1575 0.37 -1.7
1,642,777 - Dshi_1575 0.42 -1.8
1,642,847 + Dshi_1575 0.49 -0.5
1,642,897 + Dshi_1575 0.53 +0.0
1,642,928 + Dshi_1575 0.56 -1.6
1,642,944 - Dshi_1575 0.58 -1.6
1,643,010 - Dshi_1575 0.64 -1.6
1,643,090 + Dshi_1575 0.71 -0.7
1,643,104 - Dshi_1575 0.72 -0.3
1,643,129 - Dshi_1575 0.75 -1.2
1,643,386 - -1.7
1,643,548 - Dshi_1576 0.15 -0.9
1,643,622 - Dshi_1576 0.23 +0.4
1,643,632 - Dshi_1576 0.24 -2.8
1,643,764 - Dshi_1576 0.37 -1.5
1,643,805 + Dshi_1576 0.41 -0.1
1,643,940 - Dshi_1576 0.54 -1.7
1,644,103 - Dshi_1576 0.71 -0.8
1,644,107 - Dshi_1576 0.71 -0.4
1,644,132 + Dshi_1576 0.73 +0.3
1,644,140 - Dshi_1576 0.74 -0.8
1,644,158 + Dshi_1576 0.76 -0.2
1,644,213 + Dshi_1576 0.82 -0.1
1,644,224 + Dshi_1576 0.83 +0.8
1,644,245 - Dshi_1576 0.85 -1.3
1,644,299 - -0.2
1,644,299 - -0.1

Or see this region's nucleotide sequence