Strain Fitness in Pantoea sp. MT58 around IAI47_12250

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,587,726	-		IAI47_12240	0.37	+0.2
2,587,726	-		IAI47_12240	0.37	-2.4
2,587,756	+		IAI47_12240	0.42	+0.4
2,587,756	+		IAI47_12240	0.42	+1.8
2,587,757	-		IAI47_12240	0.42	+0.0
2,587,757	-		IAI47_12240	0.42	-1.3
2,587,757	-		IAI47_12240	0.42	-2.5
2,587,757	-		IAI47_12240	0.42	-1.3
2,587,757	-		IAI47_12240	0.42	+1.0
2,587,804	+		IAI47_12240	0.51	-1.7
2,587,805	-		IAI47_12240	0.51	+0.4
2,587,826	+		IAI47_12240	0.54	-0.0
2,587,827	-		IAI47_12240	0.55	+0.7
2,587,837	+		IAI47_12240	0.56	+0.6
2,587,874	+		IAI47_12240	0.63	-1.7
2,587,874	+		IAI47_12240	0.63	+0.6
2,587,874	+		IAI47_12240	0.63	-1.4
2,587,874	+		IAI47_12240	0.63	-0.3
2,587,874	+		IAI47_12240	0.63	+1.1
2,587,874	+		IAI47_12240	0.63	+1.5
2,587,874	+		IAI47_12240	0.63	-1.5
2,587,875	-		IAI47_12240	0.63	+0.1
2,587,875	-		IAI47_12240	0.63	-1.3
2,587,875	-		IAI47_12240	0.63	-2.9
2,587,878	+		IAI47_12240	0.63	-0.6
2,587,878	+		IAI47_12240	0.63	+1.3
2,587,878	+		IAI47_12240	0.63	+2.0
2,587,879	-		IAI47_12240	0.64	+0.9
2,587,887	+		IAI47_12240	0.65	+1.7
2,587,982	+		IAI47_12240	0.81	+2.9
2,587,982	+		IAI47_12240	0.81	+0.9
2,587,982	+		IAI47_12240	0.81	+0.1
2,588,004	-		IAI47_12240	0.85	-3.5
2,588,055	-				-0.4
2,588,082	+				+1.4
2,588,086	+				+1.8
2,588,086	+				+0.6
2,588,086	+				+0.9
2,588,086	+				+0.7
2,588,086	+				-0.6
2,588,087	-				+1.7
2,588,087	-				+0.4
2,588,087	-				+0.6
2,588,087	-				-1.0
2,588,089	+				+1.0
2,588,089	+				-1.1
2,588,089	+				+0.9
2,588,089	+				-0.1
2,588,089	+				-0.1
2,588,090	-				+0.6
2,588,165	+		IAI47_12245	0.13	+0.1
2,588,165	+		IAI47_12245	0.13	-0.6
2,588,167	+		IAI47_12245	0.13	-0.0
2,588,167	+		IAI47_12245	0.13	+1.5
2,588,198	-		IAI47_12245	0.19	+1.4
2,588,237	+		IAI47_12245	0.26	-0.6
2,588,318	-		IAI47_12245	0.40	-0.6
2,588,318	-		IAI47_12245	0.40	+0.6
2,588,318	-		IAI47_12245	0.40	+0.9
2,588,318	-		IAI47_12245	0.40	-1.9
2,588,393	-		IAI47_12245	0.53	+0.7
2,588,393	-		IAI47_12245	0.53	+0.2
2,588,413	+		IAI47_12245	0.56	-0.8
2,588,413	+		IAI47_12245	0.56	+3.2
2,588,414	-		IAI47_12245	0.56	-1.5
2,588,414	-		IAI47_12245	0.56	+0.1
2,588,524	+		IAI47_12245	0.75	+1.3
2,588,525	-		IAI47_12245	0.76	+1.3
2,588,599	+		IAI47_12245	0.88	+0.1
2,588,655	+				-2.6
2,588,655	+				-1.3
2,588,655	+				+1.7
2,588,655	+				-0.7
2,588,656	-				-0.0
2,588,656	-				+1.3
2,588,656	-				+2.5
2,588,656	-				+0.5
2,588,656	-				+0.4
2,588,656	-				-1.5
2,588,706	+				+0.1
2,588,706	+				+0.8
2,588,707	-				-1.0
2,588,707	-				-0.5
2,588,728	+				-1.5
2,588,728	+				-0.1
2,588,729	-				+0.0
2,588,729	-				+2.3
2,588,729	-				-1.3
2,588,734	+				+0.1
2,588,734	+				+0.1
2,588,734	+				+2.2
2,588,734	+				+0.7
2,588,735	-				-1.5
2,588,735	-				-2.0
2,588,735	-				+0.1
2,588,738	+				-1.6
2,588,739	-				-1.7
2,588,739	-				-0.5
2,588,739	-				-0.6
2,588,758	+				+0.9
2,588,767	+				+0.9
2,588,767	+				-1.1
2,588,768	-				-0.9
2,588,768	-				+1.0
2,588,887	+		IAI47_12250	0.17	+0.9
2,588,887	+		IAI47_12250	0.17	-0.6
2,588,981	-		IAI47_12250	0.26	-1.2
2,588,981	-		IAI47_12250	0.26	-1.3
2,589,063	+		IAI47_12250	0.34	+0.5
2,589,064	-		IAI47_12250	0.34	+1.1
2,589,090	+		IAI47_12250	0.37	+0.5
2,589,090	+		IAI47_12250	0.37	-2.9
2,589,090	+		IAI47_12250	0.37	-0.9
2,589,090	+		IAI47_12250	0.37	+0.1
2,589,090	+		IAI47_12250	0.37	+1.5
2,589,091	-		IAI47_12250	0.37	-0.9
2,589,091	-		IAI47_12250	0.37	-1.9
2,589,091	-		IAI47_12250	0.37	+0.0
2,589,091	-		IAI47_12250	0.37	+1.3
2,589,091	-		IAI47_12250	0.37	-1.1
2,589,091	-		IAI47_12250	0.37	+0.7
2,589,091	-		IAI47_12250	0.37	+2.1
2,589,159	+		IAI47_12250	0.43	-1.5
2,589,159	+		IAI47_12250	0.43	+2.6
2,589,160	-		IAI47_12250	0.43	-0.3
2,589,160	-		IAI47_12250	0.43	-2.3
2,589,165	-		IAI47_12250	0.44	+0.1
2,589,165	-		IAI47_12250	0.44	+2.0
2,589,165	-		IAI47_12250	0.44	-1.0
2,589,165	-		IAI47_12250	0.44	-1.0
2,589,196	+		IAI47_12250	0.47	+0.9
2,589,254	-		IAI47_12250	0.52	-1.3
2,589,254	-		IAI47_12250	0.52	-0.7
2,589,273	+		IAI47_12250	0.54	+1.4
2,589,274	-		IAI47_12250	0.54	+0.2
2,589,280	-		IAI47_12250	0.55	-1.0
2,589,293	-		IAI47_12250	0.56	+1.5
2,589,346	+		IAI47_12250	0.61	-2.0
2,589,346	+		IAI47_12250	0.61	+2.2
2,589,346	+		IAI47_12250	0.61	+0.6
2,589,347	-		IAI47_12250	0.61	-0.0
2,589,347	-		IAI47_12250	0.61	+1.7
2,589,351	+		IAI47_12250	0.62	+0.0
2,589,351	+		IAI47_12250	0.62	-0.3
2,589,351	+		IAI47_12250	0.62	+0.1
2,589,352	-		IAI47_12250	0.62	-2.9
2,589,466	+		IAI47_12250	0.72	+0.1
2,589,467	-		IAI47_12250	0.73	-2.1
2,589,467	-		IAI47_12250	0.73	+1.7
2,589,467	-		IAI47_12250	0.73	-1.2
2,589,472	+		IAI47_12250	0.73	-1.6
2,589,473	-		IAI47_12250	0.73	-0.2
2,589,482	-		IAI47_12250	0.74	-1.5
2,589,482	-		IAI47_12250	0.74	-1.3
2,589,502	+		IAI47_12250	0.76	+1.7
2,589,502	+		IAI47_12250	0.76	-0.9
2,589,502	+		IAI47_12250	0.76	-0.7
2,589,502	+		IAI47_12250	0.76	-1.5
2,589,503	-		IAI47_12250	0.76	+0.7
2,589,503	-		IAI47_12250	0.76	-2.7
2,589,503	-		IAI47_12250	0.76	-1.6
2,589,504	+		IAI47_12250	0.76	-0.6
2,589,529	-		IAI47_12250	0.78	+1.3
2,589,529	-		IAI47_12250	0.78	-0.3
2,589,559	+		IAI47_12250	0.81	+1.3
2,589,579	+		IAI47_12250	0.83	-1.5
2,589,580	-		IAI47_12250	0.83	-1.6
2,589,580	-		IAI47_12250	0.83	-0.9
2,589,618	+		IAI47_12250	0.87	-0.3
2,589,618	+		IAI47_12250	0.87	+1.5
2,589,619	-		IAI47_12250	0.87	+1.5
2,589,619	-		IAI47_12250	0.87	+0.9
2,589,619	-		IAI47_12250	0.87	-0.5
2,589,619	-		IAI47_12250	0.87	+0.1
2,589,739	+				+2.7
2,589,739	+				+0.7
2,589,743	+				-0.8
2,589,743	+				+2.5
2,589,743	+				+0.7
2,589,743	+				-0.2
2,589,743	+				+0.7
2,589,743	+				-2.6
2,589,744	-				-2.2
2,589,744	-				+1.1
2,589,744	-				+1.8
2,589,744	-				-1.1
2,589,744	-				-0.3
2,589,744	-				-0.9
2,589,771	-				+0.7
2,589,771	-				-2.4
2,589,777	-				+0.1
2,589,801	+				-2.4
2,589,801	+				-1.5
2,589,801	+				+1.5
2,589,802	-				+1.7
2,589,802	-				-2.6
2,589,802	-				-0.1
2,589,833	+				+0.4
2,589,833	+				+0.7
2,589,833	+				+1.3
2,589,834	-				-0.9
2,589,834	-				+0.2
2,589,869	+				-0.7
2,589,870	-				+0.3
2,589,883	-				-0.8
2,589,897	+				+0.7
2,589,916	+				-2.3
2,589,916	+				+0.5
2,589,917	-				-0.9
2,589,920	+				+0.2
2,589,920	+				-2.2
2,589,920	+				-0.4
2,589,920	+				-0.1
2,589,921	-				+2.3
2,589,922	+				+1.3
2,589,922	+				-0.0
2,589,922	+				+0.1
2,589,964	+				+1.7
2,589,964	+				-0.0