Strain Fitness in Pantoea sp. MT58 around IAI47_11645

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
2,466,675	-				+1.7
2,466,764	+				-1.1
2,466,771	+				-2.6
2,466,774	-				-0.9
2,466,806	-		IAI47_11635	0.14	+0.0
2,466,849	+		IAI47_11635	0.26	+0.2
2,466,882	+		IAI47_11635	0.36	+1.2
2,466,882	+		IAI47_11635	0.36	-0.1
2,466,883	-		IAI47_11635	0.36	-1.6
2,466,919	+		IAI47_11635	0.46	-0.6
2,466,920	-		IAI47_11635	0.46	+1.2
2,466,925	+		IAI47_11635	0.47	-2.2
2,466,946	-		IAI47_11635	0.53	-0.1
2,466,960	+		IAI47_11635	0.57	+0.5
2,466,960	+		IAI47_11635	0.57	+1.6
2,466,985	-		IAI47_11635	0.64	-0.5
2,467,032	+		IAI47_11635	0.77	-0.6
2,467,032	+		IAI47_11635	0.77	+0.9
2,467,119	+				-0.3
2,467,151	+				-1.4
2,467,152	-				-0.6
2,467,184	+				+0.6
2,467,184	+				-0.9
2,467,184	+				-1.2
2,467,184	+				-0.3
2,467,185	-				-0.9
2,467,185	-				+0.5
2,467,185	-				-1.3
2,467,196	+				-0.9
2,467,196	+				+0.7
2,467,196	+				+0.1
2,467,197	-				+0.5
2,467,241	+				+1.8
2,467,241	+				+2.7
2,467,242	-				+0.5
2,467,258	-				-0.8
2,467,261	+				-2.2
2,467,261	+				-0.3
2,467,262	-				-0.9
2,467,262	-				-1.5
2,467,262	-				-1.8
2,467,265	+				-1.9
2,467,322	+		IAI47_11640	0.17	+1.1
2,467,385	+		IAI47_11640	0.32	-0.1
2,467,385	+		IAI47_11640	0.32	+0.9
2,467,386	-		IAI47_11640	0.32	+1.3
2,467,395	+		IAI47_11640	0.35	+2.4
2,467,395	+		IAI47_11640	0.35	-1.6
2,467,396	-		IAI47_11640	0.35	+0.9
2,467,396	-		IAI47_11640	0.35	-2.5
2,467,413	+		IAI47_11640	0.39	+1.4
2,467,469	+		IAI47_11640	0.52	+0.7
2,467,478	+		IAI47_11640	0.55	-2.2
2,467,478	+		IAI47_11640	0.55	+1.6
2,467,479	-		IAI47_11640	0.55	+1.9
2,467,479	-		IAI47_11640	0.55	+0.8
2,467,479	-		IAI47_11640	0.55	+0.1
2,467,479	-		IAI47_11640	0.55	+0.2
2,467,479	-		IAI47_11640	0.55	+0.2
2,467,504	-		IAI47_11640	0.61	+0.3
2,467,517	-		IAI47_11640	0.64	+0.5
2,467,530	+		IAI47_11640	0.67	+0.9
2,467,531	-		IAI47_11640	0.67	+0.5
2,467,549	-		IAI47_11640	0.72	+0.8
2,467,594	-		IAI47_11640	0.83	-0.1
2,467,594	-		IAI47_11640	0.83	-2.0
2,467,612	-		IAI47_11640	0.87	+2.2
2,467,640	+				-0.3
2,467,655	+				-1.1
2,467,673	+				+1.2
2,467,674	-				-1.6
2,467,710	-				-1.8
2,467,721	-				-3.0
2,467,743	+				+1.1
2,467,743	+				+1.5
2,467,744	-				-0.5
2,467,744	-				-0.1
2,467,744	-				+0.9
2,467,744	-				+2.7
2,467,755	+				-0.5
2,467,755	+				+0.7
2,467,755	+				+0.2
2,467,755	+				+1.2
2,467,756	-				-1.3
2,467,756	-				+0.4
2,467,756	-				-1.3
2,467,756	-				+2.1
2,467,833	+		IAI47_11645	0.18	+2.3
2,467,833	+		IAI47_11645	0.18	+1.1
2,467,833	+		IAI47_11645	0.18	-0.5
2,467,833	+		IAI47_11645	0.18	+1.0
2,467,833	+		IAI47_11645	0.18	+2.2
2,467,833	+		IAI47_11645	0.18	+0.7
2,467,833	+		IAI47_11645	0.18	+0.6
2,467,833	+		IAI47_11645	0.18	+2.5
2,467,834	-		IAI47_11645	0.18	-0.6
2,467,834	-		IAI47_11645	0.18	+1.0
2,467,834	-		IAI47_11645	0.18	+2.0
2,467,834	-		IAI47_11645	0.18	-2.1
2,467,834	-		IAI47_11645	0.18	-0.4
2,467,838	+		IAI47_11645	0.18	+1.5
2,467,865	+		IAI47_11645	0.21	+0.7
2,467,870	+		IAI47_11645	0.21	+2.4
2,467,871	-		IAI47_11645	0.22	+0.6
2,467,890	-		IAI47_11645	0.23	-1.1
2,467,890	-		IAI47_11645	0.23	+0.9
2,467,890	-		IAI47_11645	0.23	-2.3
2,467,917	-		IAI47_11645	0.26	-1.8
2,467,937	+		IAI47_11645	0.28	+1.6
2,467,944	-		IAI47_11645	0.29	-1.3
2,467,947	+		IAI47_11645	0.29	+1.0
2,467,947	+		IAI47_11645	0.29	-1.1
2,467,947	+		IAI47_11645	0.29	+1.3
2,467,947	+		IAI47_11645	0.29	-3.1
2,467,948	-		IAI47_11645	0.29	+0.8
2,467,955	+		IAI47_11645	0.30	-1.1
2,467,955	+		IAI47_11645	0.30	-1.5
2,467,955	+		IAI47_11645	0.30	-1.4
2,467,955	+		IAI47_11645	0.30	+0.8
2,467,956	-		IAI47_11645	0.30	-0.4
2,467,956	-		IAI47_11645	0.30	+0.1
2,468,008	+		IAI47_11645	0.36	-0.1
2,468,009	-		IAI47_11645	0.36	+1.0
2,468,012	+		IAI47_11645	0.36	+1.4
2,468,012	+		IAI47_11645	0.36	+3.3
2,468,012	+		IAI47_11645	0.36	+1.1
2,468,012	+		IAI47_11645	0.36	+0.8
2,468,012	+		IAI47_11645	0.36	+0.3
2,468,012	+		IAI47_11645	0.36	+1.7
2,468,012	+		IAI47_11645	0.36	+0.2
2,468,013	-		IAI47_11645	0.36	-0.9
2,468,013	-		IAI47_11645	0.36	+3.0
2,468,013	-		IAI47_11645	0.36	+1.5
2,468,013	-		IAI47_11645	0.36	-0.9
2,468,013	-		IAI47_11645	0.36	+0.6
2,468,013	-		IAI47_11645	0.36	+1.3
2,468,013	-		IAI47_11645	0.36	-0.9
2,468,013	-		IAI47_11645	0.36	-0.9
2,468,013	-		IAI47_11645	0.36	+0.7
2,468,016	+		IAI47_11645	0.36	+0.8
2,468,016	+		IAI47_11645	0.36	+0.8
2,468,016	+		IAI47_11645	0.36	+0.2
2,468,017	-		IAI47_11645	0.37	+0.6
2,468,017	-		IAI47_11645	0.37	-0.9
2,468,025	+		IAI47_11645	0.37	+0.7
2,468,033	+		IAI47_11645	0.38	+0.4
2,468,033	+		IAI47_11645	0.38	-0.3
2,468,033	+		IAI47_11645	0.38	+0.6
2,468,033	+		IAI47_11645	0.38	+1.3
2,468,033	+		IAI47_11645	0.38	-1.8
2,468,033	+		IAI47_11645	0.38	+1.5
2,468,034	-		IAI47_11645	0.38	+1.1
2,468,034	-		IAI47_11645	0.38	-0.8
2,468,034	-		IAI47_11645	0.38	+1.3
2,468,034	-		IAI47_11645	0.38	-1.2
2,468,034	-		IAI47_11645	0.38	+0.2
2,468,034	-		IAI47_11645	0.38	-0.4
2,468,034	-		IAI47_11645	0.38	-2.1
2,468,034	-		IAI47_11645	0.38	-2.1
2,468,071	+		IAI47_11645	0.42	+0.5
2,468,072	-		IAI47_11645	0.42	+2.9
2,468,091	-		IAI47_11645	0.44	+1.6
2,468,103	-		IAI47_11645	0.45	+1.7
2,468,103	-		IAI47_11645	0.45	+0.7
2,468,103	-		IAI47_11645	0.45	+1.3
2,468,112	+		IAI47_11645	0.46	+1.0
2,468,113	-		IAI47_11645	0.46	-1.9
2,468,229	+		IAI47_11645	0.58	-1.8
2,468,230	-		IAI47_11645	0.58	+1.8
2,468,230	-		IAI47_11645	0.58	-0.9
2,468,260	+		IAI47_11645	0.62	-0.5
2,468,261	-		IAI47_11645	0.62	-1.8
2,468,282	-		IAI47_11645	0.64	+1.0
2,468,306	+		IAI47_11645	0.66	+1.5
2,468,306	+		IAI47_11645	0.66	-0.8
2,468,306	+		IAI47_11645	0.66	+1.7
2,468,306	+		IAI47_11645	0.66	+0.7
2,468,306	+		IAI47_11645	0.66	+0.9
2,468,306	+		IAI47_11645	0.66	+1.4
2,468,307	-		IAI47_11645	0.66	+0.9
2,468,307	-		IAI47_11645	0.66	-1.5
2,468,307	-		IAI47_11645	0.66	+0.4
2,468,307	-		IAI47_11645	0.66	+0.8
2,468,307	-		IAI47_11645	0.66	+0.9
2,468,307	-		IAI47_11645	0.66	+0.8
2,468,307	-		IAI47_11645	0.66	-0.4
2,468,307	-		IAI47_11645	0.66	-0.8
2,468,307	-		IAI47_11645	0.66	+0.9
2,468,312	-		IAI47_11645	0.67	+0.4
2,468,329	+		IAI47_11645	0.69	+0.8
2,468,339	-		IAI47_11645	0.70	-1.3
2,468,350	+		IAI47_11645	0.71	+1.3
2,468,351	-		IAI47_11645	0.71	+1.7
2,468,351	-		IAI47_11645	0.71	+0.7
2,468,351	-		IAI47_11645	0.71	-1.3
2,468,351	-		IAI47_11645	0.71	-0.7
2,468,358	+		IAI47_11645	0.72	-1.9
2,468,358	+		IAI47_11645	0.72	-0.3
2,468,358	+		IAI47_11645	0.72	+1.1
2,468,358	+		IAI47_11645	0.72	-0.3
2,468,358	+		IAI47_11645	0.72	+2.6
2,468,358	+		IAI47_11645	0.72	+0.5
2,468,359	-		IAI47_11645	0.72	-0.8
2,468,359	-		IAI47_11645	0.72	-0.2
2,468,359	-		IAI47_11645	0.72	-0.9
2,468,359	-		IAI47_11645	0.72	+0.5
2,468,407	+		IAI47_11645	0.77	+2.3
2,468,407	+		IAI47_11645	0.77	+1.4
2,468,407	+		IAI47_11645	0.77	+0.1
2,468,407	+		IAI47_11645	0.77	-1.5
2,468,408	-		IAI47_11645	0.77	-1.7
2,468,408	-		IAI47_11645	0.77	-2.0
2,468,408	-		IAI47_11645	0.77	+2.6
2,468,410	+		IAI47_11645	0.77	-0.6
2,468,411	-		IAI47_11645	0.77	-2.1
2,468,425	+		IAI47_11645	0.79	+1.4
2,468,465	-		IAI47_11645	0.83	-0.6
2,468,486	+		IAI47_11645	0.85	+1.5
2,468,504	-		IAI47_11645	0.87	+2.1
2,468,526	-		IAI47_11645	0.89	-0.4
2,468,554	+				+2.0
2,468,554	+				+1.1
2,468,554	+				+0.3
2,468,555	-				+0.9
2,468,555	-				-1.5
2,468,555	-				+0.6
2,468,555	-				-0.6
2,468,555	-				-1.3
2,468,555	-				+1.2
2,468,569	-				+1.5
2,468,671	-				-0.6
2,468,671	-				+0.4
2,468,679	+				+1.1
2,468,679	+				+0.1
2,468,685	+				+1.5
2,468,685	+				+1.4
2,468,686	-				-1.6
2,468,686	-				-1.5
2,468,752	-				-1.7
2,468,829	+		IAI47_11650	0.16	+1.1
2,468,830	-		IAI47_11650	0.17	-0.8
2,468,862	+		IAI47_11650	0.23	+2.4
2,468,862	+		IAI47_11650	0.23	-1.5
2,468,863	-		IAI47_11650	0.23	+1.3
2,468,863	-		IAI47_11650	0.23	-0.2
2,468,878	+		IAI47_11650	0.27	+0.4
2,468,878	+		IAI47_11650	0.27	+1.0
2,468,879	-		IAI47_11650	0.27	-2.0
2,468,879	-		IAI47_11650	0.27	-0.2
2,468,879	-		IAI47_11650	0.27	-0.9
2,468,901	+		IAI47_11650	0.31	-1.3
2,468,901	+		IAI47_11650	0.31	-1.7
2,468,902	-		IAI47_11650	0.31	-0.9
2,468,902	-		IAI47_11650	0.31	-0.2
2,468,946	+		IAI47_11650	0.41	+1.0
2,468,946	+		IAI47_11650	0.41	+1.9
2,468,947	-		IAI47_11650	0.41	+2.1
2,468,947	-		IAI47_11650	0.41	+0.2
2,468,947	-		IAI47_11650	0.41	+1.1
2,468,972	-		IAI47_11650	0.46	+0.5
2,468,977	+		IAI47_11650	0.47	+0.9
2,468,977	+		IAI47_11650	0.47	+0.3
2,468,977	+		IAI47_11650	0.47	-0.7
2,468,977	+		IAI47_11650	0.47	+0.3
2,468,977	+		IAI47_11650	0.47	+0.5
2,468,978	-		IAI47_11650	0.47	+0.7
2,468,978	-		IAI47_11650	0.47	+0.1
2,468,978	-		IAI47_11650	0.47	+0.8
2,468,992	+		IAI47_11650	0.50	+1.4
2,469,004	+		IAI47_11650	0.53	+0.2
2,469,034	+		IAI47_11650	0.59	-1.5
2,469,035	-		IAI47_11650	0.59	+0.3
2,469,035	-		IAI47_11650	0.59	+1.8
2,469,035	-		IAI47_11650	0.59	+0.5
2,469,035	-		IAI47_11650	0.59	+1.4
2,469,073	+		IAI47_11650	0.67	-2.5
2,469,074	-		IAI47_11650	0.67	+2.7
2,469,074	-		IAI47_11650	0.67	+1.3
2,469,079	+		IAI47_11650	0.68	+2.0
2,469,080	-		IAI47_11650	0.68	-1.6
2,469,085	+		IAI47_11650	0.69	+1.5
2,469,151	+		IAI47_11650	0.83	+1.7
2,469,151	+		IAI47_11650	0.83	+0.9
2,469,151	+		IAI47_11650	0.83	+2.0
2,469,151	+		IAI47_11650	0.83	+0.2
2,469,152	-		IAI47_11650	0.83	+1.7
2,469,152	-		IAI47_11650	0.83	-1.5
2,469,152	-		IAI47_11650	0.83	-1.6
2,469,152	-		IAI47_11650	0.83	+1.7
2,469,154	+		IAI47_11650	0.84	+1.5
2,469,197	-				+2.7
2,469,214	+				+0.4
2,469,215	-				-0.6
2,469,221	-				+1.3
2,469,221	-				-2.2
2,469,226	+				-0.6
2,469,407	+				+0.4
2,469,407	+				+3.0
2,469,407	+				+0.9
2,469,409	+				+1.4
2,469,410	-				-0.2
2,469,487	+				+2.0
2,469,493	-				+2.7
2,469,568	+		IAI47_11655	0.45	-1.3