Strain Fitness in Pantoea sp. MT58 around IAI47_07635

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
1,615,702	+				+0.8
1,615,703	-				+0.9
1,615,746	+				+0.1
1,615,746	+				+0.8
1,615,746	+				+0.5
1,615,747	-				+0.9
1,615,753	+				-0.5
1,615,755	+				-1.5
1,615,755	+				-1.3
1,615,755	+				+0.9
1,615,756	-				+0.7
1,615,827	+				-1.1
1,615,827	+				-0.5
1,615,827	+				+2.1
1,615,827	+				+2.2
1,615,827	+				-0.9
1,615,827	+				+1.7
1,615,827	+				-0.4
1,615,828	-				-0.1
1,615,828	-				+0.5
1,615,828	-				+0.2
1,615,828	-				-0.8
1,615,828	-				-0.6
1,615,828	-				-0.5
1,615,828	-				+0.1
1,615,988	+		IAI47_07630	0.27	+1.2
1,616,032	+		IAI47_07630	0.31	-1.3
1,616,032	+		IAI47_07630	0.31	-0.5
1,616,032	+		IAI47_07630	0.31	+0.2
1,616,032	+		IAI47_07630	0.31	-1.3
1,616,032	+		IAI47_07630	0.31	+1.1
1,616,032	+		IAI47_07630	0.31	+0.7
1,616,032	+		IAI47_07630	0.31	-2.5
1,616,032	+		IAI47_07630	0.31	-0.1
1,616,033	-		IAI47_07630	0.31	+0.5
1,616,033	-		IAI47_07630	0.31	-2.3
1,616,033	-		IAI47_07630	0.31	-1.9
1,616,033	-		IAI47_07630	0.31	+0.9
1,616,033	-		IAI47_07630	0.31	+1.0
1,616,033	-		IAI47_07630	0.31	-1.6
1,616,033	-		IAI47_07630	0.31	+1.0
1,616,067	+		IAI47_07630	0.35	+0.6
1,616,067	+		IAI47_07630	0.35	-0.6
1,616,067	+		IAI47_07630	0.35	-0.2
1,616,067	+		IAI47_07630	0.35	+0.1
1,616,068	-		IAI47_07630	0.35	-1.3
1,616,068	-		IAI47_07630	0.35	+0.5
1,616,068	-		IAI47_07630	0.35	+0.7
1,616,068	-		IAI47_07630	0.35	+2.2
1,616,077	+		IAI47_07630	0.36	+0.7
1,616,077	+		IAI47_07630	0.36	-2.5
1,616,078	-		IAI47_07630	0.36	+0.7
1,616,124	-		IAI47_07630	0.41	-2.2
1,616,252	+		IAI47_07630	0.55	+0.5
1,616,252	+		IAI47_07630	0.55	-0.3
1,616,252	+		IAI47_07630	0.55	+0.8
1,616,253	-		IAI47_07630	0.55	+1.1
1,616,375	+		IAI47_07630	0.68	+2.4
1,616,662	+				-1.5
1,616,665	+				+1.2
1,616,665	+				-2.5
1,616,665	+				-2.1
1,616,665	+				+0.7
1,616,665	+				-2.5
1,616,665	+				-0.9
1,616,665	+				-1.7
1,616,665	+				+2.5
1,616,665	+				+1.6
1,616,665	+				-0.9
1,616,666	-				-1.9
1,616,666	-				+1.4
1,616,666	-				-0.6
1,616,666	-				-1.5
1,616,666	-				-0.9
1,616,679	+				+3.0
1,616,679	+				+3.1
1,616,679	+				+0.3
1,616,679	+				+0.8
1,616,680	-				+0.6
1,616,800	+		IAI47_07635	0.12	-2.1
1,616,956	+		IAI47_07635	0.25	-2.2
1,616,956	+		IAI47_07635	0.25	+1.7
1,616,956	+		IAI47_07635	0.25	-0.2
1,616,956	+		IAI47_07635	0.25	-1.5
1,616,956	+		IAI47_07635	0.25	-2.2
1,616,957	-		IAI47_07635	0.25	+1.2
1,616,957	-		IAI47_07635	0.25	-0.1
1,617,026	-		IAI47_07635	0.31	+0.5
1,617,026	-		IAI47_07635	0.31	+0.6
1,617,026	-		IAI47_07635	0.31	+0.4
1,617,113	+		IAI47_07635	0.39	+1.1
1,617,114	-		IAI47_07635	0.39	+3.3
1,617,114	-		IAI47_07635	0.39	-2.2
1,617,124	+		IAI47_07635	0.40	-0.6
1,617,124	+		IAI47_07635	0.40	-0.5
1,617,124	+		IAI47_07635	0.40	+1.4
1,617,124	+		IAI47_07635	0.40	-1.7
1,617,124	+		IAI47_07635	0.40	-0.9
1,617,124	+		IAI47_07635	0.40	-2.6
1,617,124	+		IAI47_07635	0.40	+1.2
1,617,125	-		IAI47_07635	0.40	-0.6
1,617,125	-		IAI47_07635	0.40	+1.7
1,617,125	-		IAI47_07635	0.40	-2.5
1,617,125	-		IAI47_07635	0.40	-1.1
1,617,253	+		IAI47_07635	0.51	-1.1
1,617,254	-		IAI47_07635	0.52	+0.5
1,617,254	-		IAI47_07635	0.52	+1.7
1,617,293	-		IAI47_07635	0.55	+0.1
1,617,436	+		IAI47_07635	0.68	-0.6
1,617,518	+		IAI47_07635	0.75	+0.8
1,617,521	+		IAI47_07635	0.75	-1.3
1,617,521	+		IAI47_07635	0.75	-1.3
1,617,522	-		IAI47_07635	0.75	-1.1
1,617,574	-		IAI47_07635	0.80	-0.3
1,617,640	+		IAI47_07635	0.86	-0.8
1,617,640	+		IAI47_07635	0.86	-0.6
1,617,641	-		IAI47_07635	0.86	+0.1
1,617,641	-		IAI47_07635	0.86	-0.9
1,617,641	-		IAI47_07635	0.86	-1.5
1,617,665	+		IAI47_07635	0.88	+2.1
1,617,665	+		IAI47_07635	0.88	-1.1
1,617,665	+		IAI47_07635	0.88	+0.7
1,617,666	-		IAI47_07635	0.88	-0.9
1,617,666	-		IAI47_07635	0.88	-1.3
1,617,713	+				+2.1
1,617,714	-				+1.3
1,617,748	+				-1.3
1,617,749	-				-0.6
1,617,846	-				-2.9
1,617,846	-				-1.5
1,617,855	+				+0.4
1,617,856	-				+0.7
1,617,856	-				+2.5
1,617,856	-				-1.3
1,617,876	+				+3.2
1,617,877	-				-0.2
1,617,877	-				+1.0
1,617,877	-				-2.6
1,617,896	+				+0.1
1,617,897	-				+1.0
1,617,912	+				-2.2
1,617,912	+				-0.3
1,617,913	-				-0.4
1,617,913	-				+1.7
1,617,946	+				+0.6
1,617,946	+				-1.4
1,617,946	+				+2.1
1,617,947	-				+1.5
1,617,947	-				-0.5
1,617,947	-				+0.9
1,617,947	-				+0.1
1,617,947	-				+1.4
1,617,955	-				+3.2
1,617,965	+				-2.0
1,617,965	+				+2.1
1,618,049	+		IAI47_07640	0.10	+0.7
1,618,049	+		IAI47_07640	0.10	+1.5
1,618,049	+		IAI47_07640	0.10	+0.3
1,618,050	-		IAI47_07640	0.10	-1.5
1,618,072	+		IAI47_07640	0.12	+0.8
1,618,201	+		IAI47_07640	0.22	-0.2
1,618,202	-		IAI47_07640	0.22	+1.0
1,618,368	+		IAI47_07640	0.34	+2.3
1,618,368	+		IAI47_07640	0.34	-0.5
1,618,395	+		IAI47_07640	0.36	+0.4
1,618,408	+		IAI47_07640	0.37	-0.7
1,618,409	-		IAI47_07640	0.37	+1.1
1,618,409	-		IAI47_07640	0.37	-1.7
1,618,409	-		IAI47_07640	0.37	+1.7
1,618,409	-		IAI47_07640	0.37	-2.4
1,618,409	-		IAI47_07640	0.37	+0.4
1,618,444	+		IAI47_07640	0.40	-1.1
1,618,444	+		IAI47_07640	0.40	+0.1
1,618,444	+		IAI47_07640	0.40	-0.6
1,618,444	+		IAI47_07640	0.40	-2.3
1,618,444	+		IAI47_07640	0.40	+0.7
1,618,444	+		IAI47_07640	0.40	+0.9
1,618,444	+		IAI47_07640	0.40	+1.6
1,618,445	-		IAI47_07640	0.40	+1.3
1,618,445	-		IAI47_07640	0.40	+0.1
1,618,445	-		IAI47_07640	0.40	-2.5
1,618,609	-		IAI47_07640	0.53	+0.9
1,618,626	+		IAI47_07640	0.54	+0.0
1,618,627	-		IAI47_07640	0.54	+0.3
1,618,627	-		IAI47_07640	0.54	-2.2
1,618,733	+		IAI47_07640	0.62	+0.1
1,618,733	+		IAI47_07640	0.62	+1.1
1,618,733	+		IAI47_07640	0.62	-2.2
1,618,734	-		IAI47_07640	0.62	-0.1
1,618,734	-		IAI47_07640	0.62	-1.5
1,618,737	+		IAI47_07640	0.62	-0.8
1,618,737	+		IAI47_07640	0.62	-1.6
1,618,737	+		IAI47_07640	0.62	-1.1
1,618,737	+		IAI47_07640	0.62	-1.4