Strain Fitness in Pantoea sp. MT58 around IAI47_00145

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
29,683	-				+3.5
29,690	-				+1.3
29,723	+				+1.0
29,732	-				-1.4
29,743	+				-0.2
29,743	+				+2.3
29,743	+				-0.1
29,744	-				-2.5
29,744	-				+1.0
29,744	-				-1.3
29,744	-				+2.2
29,744	-				+0.1
29,760	+				-1.4
29,760	+				+0.8
29,760	+				+0.9
29,761	-				+1.2
29,792	+				+0.4
29,792	+				+0.9
29,792	+				-0.9
29,792	+				+0.9
29,792	+				+2.9
29,810	+				-0.2
29,811	-				+0.1
29,825	+				-1.9
29,826	-				-0.9
29,851	-				-1.0
29,890	+				-2.0
29,893	+				+1.8
29,893	+				-0.4
29,893	+				+0.8
29,893	+				-1.8
29,893	+				-0.1
29,894	-				-2.2
29,894	-				-0.2
29,894	-				+0.1
29,894	-				-2.0
29,894	-				-1.2
29,894	-				+0.7
29,894	-				+1.1
29,990	+		IAI47_00140	0.15	+0.4
29,990	+		IAI47_00140	0.15	-2.6
30,100	+		IAI47_00140	0.32	+1.0
30,101	-		IAI47_00140	0.32	+1.1
30,105	+		IAI47_00140	0.32	-0.9
30,105	+		IAI47_00140	0.32	+1.0
30,106	-		IAI47_00140	0.32	-1.8
30,106	-		IAI47_00140	0.32	+1.0
30,106	-		IAI47_00140	0.32	-0.4
30,164	+		IAI47_00140	0.41	+0.3
30,194	+		IAI47_00140	0.46	+1.0
30,194	+		IAI47_00140	0.46	+0.2
30,194	+		IAI47_00140	0.46	+1.0
30,194	+		IAI47_00140	0.46	-0.2
30,195	-		IAI47_00140	0.46	+1.5
30,195	-		IAI47_00140	0.46	+0.9
30,197	+		IAI47_00140	0.46	-0.8
30,198	-		IAI47_00140	0.46	+1.7
30,198	-		IAI47_00140	0.46	-0.2
30,198	-		IAI47_00140	0.46	-1.0
30,215	+		IAI47_00140	0.49	-0.5
30,215	+		IAI47_00140	0.49	-0.6
30,215	+		IAI47_00140	0.49	-1.0
30,216	-		IAI47_00140	0.49	+0.7
30,216	-		IAI47_00140	0.49	-2.4
30,216	-		IAI47_00140	0.49	-0.9
30,216	-		IAI47_00140	0.49	-2.5
30,216	-		IAI47_00140	0.49	+1.5
30,216	-		IAI47_00140	0.49	-0.9
30,216	-		IAI47_00140	0.49	-0.9
30,216	-		IAI47_00140	0.49	+0.2
30,225	-		IAI47_00140	0.50	+0.4
30,239	+		IAI47_00140	0.53	-2.2
30,249	-		IAI47_00140	0.54	+1.8
30,249	-		IAI47_00140	0.54	+1.0
30,249	-		IAI47_00140	0.54	+0.1
30,249	-		IAI47_00140	0.54	-0.7
30,303	+		IAI47_00140	0.62	-0.6
30,303	+		IAI47_00140	0.62	-2.2
30,303	+		IAI47_00140	0.62	-2.6
30,304	-		IAI47_00140	0.62	+1.8
30,304	-		IAI47_00140	0.62	-1.8
30,304	-		IAI47_00140	0.62	-1.7
30,304	-		IAI47_00140	0.62	+1.5
30,304	-		IAI47_00140	0.62	-0.1
30,304	-		IAI47_00140	0.62	+0.3
30,304	-		IAI47_00140	0.62	+1.7
30,304	-		IAI47_00140	0.62	+1.6
30,304	-		IAI47_00140	0.62	+2.1
30,304	-		IAI47_00140	0.62	-2.2
30,304	-		IAI47_00140	0.62	-0.3
30,313	+		IAI47_00140	0.64	+0.1
30,313	+		IAI47_00140	0.64	-0.6
30,313	+		IAI47_00140	0.64	-1.2
30,313	+		IAI47_00140	0.64	-1.0
30,313	+		IAI47_00140	0.64	-1.7
30,313	+		IAI47_00140	0.64	+0.8
30,314	-		IAI47_00140	0.64	+0.6
30,314	-		IAI47_00140	0.64	-1.9
30,314	-		IAI47_00140	0.64	+2.7
30,314	-		IAI47_00140	0.64	+1.5
30,314	-		IAI47_00140	0.64	+0.4
30,314	-		IAI47_00140	0.64	+0.3
30,314	-		IAI47_00140	0.64	+0.9
30,314	-		IAI47_00140	0.64	-0.7
30,314	-		IAI47_00140	0.64	+0.4
30,314	-		IAI47_00140	0.64	+0.8
30,314	-		IAI47_00140	0.64	-0.3
30,314	-		IAI47_00140	0.64	+2.0
30,314	-		IAI47_00140	0.64	+2.2
30,314	-		IAI47_00140	0.64	-0.4
30,316	+		IAI47_00140	0.64	+0.1
30,316	+		IAI47_00140	0.64	-0.3
30,316	+		IAI47_00140	0.64	-0.7
30,371	+		IAI47_00140	0.73	-0.3
30,371	+		IAI47_00140	0.73	+1.2
30,371	+		IAI47_00140	0.73	+1.2
30,371	+		IAI47_00140	0.73	+1.7
30,475	+		IAI47_00140	0.88	+1.0
30,475	+		IAI47_00140	0.88	+0.5
30,475	+		IAI47_00140	0.88	+0.9
30,475	+		IAI47_00140	0.88	-0.6
30,475	+		IAI47_00140	0.88	-3.7
30,476	-		IAI47_00140	0.88	+1.3
30,488	+				+0.3
30,488	+				-2.7
30,488	+				+0.4
30,489	-				-0.8
30,489	-				-0.1
30,516	+				+0.6
30,516	+				-0.3
30,516	+				-0.2
30,517	-				-0.5
30,517	-				+1.2
30,519	+				-0.8
30,519	+				+1.1
30,520	-				-0.4
30,520	-				-2.2
30,520	-				-2.7
30,520	-				-2.5
30,563	+				-0.7
30,563	+				+0.3
30,563	+				-1.6
30,563	+				+0.6
30,563	+				+1.2
30,563	+				-1.7
30,564	-				-1.0
30,564	-				-1.4
30,564	-				-1.8
30,596	-				+0.5
30,608	+				+0.6
30,608	+				+0.0
30,609	-				-1.7
30,609	-				+1.6
30,632	+				+0.7
30,632	+				-0.3
30,632	+				+0.2
30,632	+				+2.2
30,633	-				+0.4
30,653	+				+0.2
30,713	+				-2.3
30,714	-				-2.2
30,714	-				+0.4
30,714	-				+0.1
30,714	-				+1.8
30,714	-				+1.5
30,714	-				-0.6
30,714	-				+1.0
30,714	-				+1.5
30,733	+		IAI47_00145	0.13	+1.2
30,733	+		IAI47_00145	0.13	-1.7
30,733	+		IAI47_00145	0.13	-0.7
30,733	+		IAI47_00145	0.13	-1.7
30,733	+		IAI47_00145	0.13	+0.0
30,733	+		IAI47_00145	0.13	+1.0
30,734	-		IAI47_00145	0.13	-1.0
30,734	-		IAI47_00145	0.13	+2.4
30,734	-		IAI47_00145	0.13	+0.6
30,742	-		IAI47_00145	0.14	+0.6
30,790	+		IAI47_00145	0.23	-2.0
30,791	-		IAI47_00145	0.23	+0.2
30,791	-		IAI47_00145	0.23	+0.4
30,834	+		IAI47_00145	0.30	-2.8
30,834	+		IAI47_00145	0.30	-2.0
30,835	-		IAI47_00145	0.31	+0.5
30,835	-		IAI47_00145	0.31	+1.8
30,924	+		IAI47_00145	0.46	+0.2
30,924	+		IAI47_00145	0.46	-1.8
30,924	+		IAI47_00145	0.46	+1.5
30,925	-		IAI47_00145	0.46	-1.4
30,925	-		IAI47_00145	0.46	+0.8
30,925	-		IAI47_00145	0.46	-0.6
30,925	-		IAI47_00145	0.46	+1.3
30,937	+		IAI47_00145	0.49	+0.8
30,958	+		IAI47_00145	0.52	-0.2
30,958	+		IAI47_00145	0.52	-0.0
30,974	-		IAI47_00145	0.55	+0.2
31,003	+		IAI47_00145	0.60	+1.1
31,003	+		IAI47_00145	0.60	+1.8
31,003	+		IAI47_00145	0.60	+0.3
31,004	-		IAI47_00145	0.60	+1.3
31,004	-		IAI47_00145	0.60	+1.6
31,004	-		IAI47_00145	0.60	-1.7
31,004	-		IAI47_00145	0.60	+1.1
31,006	-		IAI47_00145	0.61	+1.7
31,025	+		IAI47_00145	0.64	+1.4
31,025	+		IAI47_00145	0.64	+1.6
31,025	+		IAI47_00145	0.64	+0.5
31,025	+		IAI47_00145	0.64	+1.5
31,025	+		IAI47_00145	0.64	+0.2
31,026	-		IAI47_00145	0.64	-3.2
31,026	-		IAI47_00145	0.64	-2.2
31,062	+		IAI47_00145	0.71	+1.7
31,063	-		IAI47_00145	0.71	+1.8
31,063	-		IAI47_00145	0.71	+1.1
31,097	+		IAI47_00145	0.77	+0.0
31,097	+		IAI47_00145	0.77	-1.2
31,183	-				+1.0
31,183	-				+1.1
31,191	+				-1.1
31,191	+				+0.8
31,191	+				+0.4
31,191	+				+0.4
31,191	+				+1.5
31,191	+				-0.8
31,191	+				+0.4
31,191	+				-0.5
31,192	-				-0.2
31,192	-				+1.6
31,192	-				+2.3
31,192	-				-0.6
31,192	-				-0.9
31,192	-				+0.0
31,243	-				-2.6
31,285	-				+0.1
31,294	+				+1.0
31,295	-				-1.2
31,295	-				+0.7
31,295	-				-0.3
31,295	-				+0.5
31,295	-				+0.4
31,295	-				-0.9
31,295	-				-0.2
31,295	-				+2.3
31,295	-				-0.2
31,295	-				-2.2
31,295	-				-1.3
31,298	+				+0.8
31,298	+				+1.5
31,298	+				-2.1
31,299	-				+0.3
31,299	-				-0.6
31,299	-				-1.1
31,299	-				+1.3
31,299	-				-1.4
31,313	+				+0.8
31,314	-				+3.0
31,317	+				-0.8
31,318	-				+0.7
31,343	+				-1.3
31,343	+				-0.2
31,343	+				-0.2
31,343	+				+1.1
31,343	+				-0.1
31,344	-				+0.5
31,356	-				+0.2
31,358	+				-1.8
31,358	+				-1.8
31,358	+				-1.0
31,358	+				+0.2
31,358	+				-1.9
31,359	-				-0.8
31,359	-				-1.5
31,430	+				-2.7
31,430	+				+1.2
31,430	+				-1.0
31,430	+				-1.2
31,430	+				-0.3
31,430	+				+0.4
31,430	+				-1.0
31,430	+				-0.6
31,430	+				-0.0
31,431	-				-2.6
31,431	-				+0.2
31,431	-				+0.3
31,431	-				-1.0
31,431	-				+0.8
31,431	-				-0.5
31,431	-				-2.1
31,431	-				-1.5
31,439	+				-1.0
31,510	+		IAI47_00150	0.18	+0.6
31,511	-		IAI47_00150	0.18	-0.7
31,602	+		IAI47_00150	0.32	+0.4
31,643	+		IAI47_00150	0.38	-2.4
31,643	+		IAI47_00150	0.38	-1.1
31,643	+		IAI47_00150	0.38	-2.2
31,644	-		IAI47_00150	0.38	+0.9
31,650	+		IAI47_00150	0.39	+0.4
31,651	-		IAI47_00150	0.39	+0.6
31,692	+		IAI47_00150	0.45	+0.7
31,692	+		IAI47_00150	0.45	-2.0
31,692	+		IAI47_00150	0.45	-1.7
31,693	-		IAI47_00150	0.45	+2.0
31,693	-		IAI47_00150	0.45	-1.7
31,729	+		IAI47_00150	0.50	-0.2
31,729	+		IAI47_00150	0.50	+0.2
31,771	+		IAI47_00150	0.56	-2.7
31,772	-		IAI47_00150	0.56	+1.4
31,772	-		IAI47_00150	0.56	+1.7
31,772	-		IAI47_00150	0.56	-1.7
31,842	-		IAI47_00150	0.67	-0.0
31,864	+		IAI47_00150	0.70	-1.9
31,864	+		IAI47_00150	0.70	-0.1
31,864	+		IAI47_00150	0.70	+2.6
31,864	+		IAI47_00150	0.70	-0.0
31,864	+		IAI47_00150	0.70	-1.2
31,864	+		IAI47_00150	0.70	-1.5
31,865	-		IAI47_00150	0.70	+1.0
31,865	-		IAI47_00150	0.70	-0.1
31,865	-		IAI47_00150	0.70	-0.8
31,865	-		IAI47_00150	0.70	+1.0
31,865	-		IAI47_00150	0.70	+0.4
31,865	-		IAI47_00150	0.70	-0.8
31,865	-		IAI47_00150	0.70	-1.2
31,865	-		IAI47_00150	0.70	+0.6
31,871	-		IAI47_00150	0.71	-0.7
31,871	-		IAI47_00150	0.71	+2.0
31,871	-		IAI47_00150	0.71	+0.9
31,871	-		IAI47_00150	0.71	+1.1
31,871	-		IAI47_00150	0.71	+0.3
31,871	-		IAI47_00150	0.71	+0.4
31,884	+		IAI47_00150	0.73	-1.9
31,884	+		IAI47_00150	0.73	+0.6
31,884	+		IAI47_00150	0.73	+0.2
31,885	-		IAI47_00150	0.73	+1.8
31,885	-		IAI47_00150	0.73	-0.4
31,885	-		IAI47_00150	0.73	+0.2
31,885	-		IAI47_00150	0.73	-0.9
31,885	-		IAI47_00150	0.73	-0.3
32,023	-				+1.6
32,041	+				-0.2
32,041	+				-0.1
32,042	-				-0.2
32,042	-				-1.7
32,043	+				-0.0
32,044	-				-0.0
32,044	-				-0.2
32,068	+				+2.0
32,068	+				-3.1
32,069	-				-0.4
32,069	-				-2.0
32,078	+				+1.6
32,078	+				-2.6
32,104	+				-0.3
32,109	+				-3.8
32,145	-				+0.4
32,145	-				+1.7
32,165	+				-1.8
32,165	+				+1.2
32,165	+				-0.3
32,166	-				+1.1
32,166	-				+0.4
32,166	-				+1.0
32,166	-				-0.2
32,166	-				-0.1
32,219	+		IAI47_00155	0.11	-0.2
32,220	-		IAI47_00155	0.11	+0.9