Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2368

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2367 and Ga0059261_2368 are separated by 10 nucleotidesGa0059261_2368 and Ga0059261_2369 are separated by 83 nucleotidesGa0059261_2369 and Ga0059261_2370 are separated by 168 nucleotides Ga0059261_2367: Ga0059261_2367 - Phage tail sheath protein FI, at 2,467,689 to 2,468,828 _2367 Ga0059261_2368: Ga0059261_2368 - Phage baseplate assembly protein W, at 2,468,839 to 2,469,195 _2368 Ga0059261_2369: Ga0059261_2369 - phage baseplate assembly protein V, at 2,469,279 to 2,469,851 _2369 Ga0059261_2370: Ga0059261_2370 - hypothetical protein, at 2,470,020 to 2,470,409 _2370 Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2467.843 kb on + strand, within Ga0059261_2367at 2467.843 kb on + strand, within Ga0059261_2367at 2467.843 kb on + strand, within Ga0059261_2367at 2467.843 kb on + strand, within Ga0059261_2367at 2467.843 kb on + strand, within Ga0059261_2367at 2467.844 kb on - strand, within Ga0059261_2367at 2467.844 kb on - strand, within Ga0059261_2367at 2467.951 kb on + strand, within Ga0059261_2367at 2467.951 kb on + strand, within Ga0059261_2367at 2467.951 kb on + strand, within Ga0059261_2367at 2467.951 kb on + strand, within Ga0059261_2367at 2467.952 kb on - strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.155 kb on + strand, within Ga0059261_2367at 2468.156 kb on - strandat 2468.156 kb on - strand, within Ga0059261_2367at 2468.156 kb on - strand, within Ga0059261_2367at 2468.156 kb on - strand, within Ga0059261_2367at 2468.158 kb on - strand, within Ga0059261_2367at 2468.189 kb on + strand, within Ga0059261_2367at 2468.189 kb on + strand, within Ga0059261_2367at 2468.189 kb on + strand, within Ga0059261_2367at 2468.189 kb on + strand, within Ga0059261_2367at 2468.190 kb on - strand, within Ga0059261_2367at 2468.190 kb on - strand, within Ga0059261_2367at 2468.332 kb on + strand, within Ga0059261_2367at 2468.333 kb on - strand, within Ga0059261_2367at 2468.333 kb on - strand, within Ga0059261_2367at 2468.333 kb on - strand, within Ga0059261_2367at 2468.374 kb on + strand, within Ga0059261_2367at 2468.374 kb on + strand, within Ga0059261_2367at 2468.374 kb on + strand, within Ga0059261_2367at 2468.375 kb on - strand, within Ga0059261_2367at 2468.467 kb on + strand, within Ga0059261_2367at 2468.467 kb on + strand, within Ga0059261_2367at 2468.467 kb on + strand, within Ga0059261_2367at 2468.467 kb on + strand, within Ga0059261_2367at 2468.468 kb on - strand, within Ga0059261_2367at 2468.813 kb on + strandat 2468.814 kb on - strandat 2468.814 kb on - strandat 2469.089 kb on + strand, within Ga0059261_2368at 2469.089 kb on + strand, within Ga0059261_2368at 2469.089 kb on + strand, within Ga0059261_2368at 2469.153 kb on + strand, within Ga0059261_2368at 2469.153 kb on + strand, within Ga0059261_2368at 2469.242 kb on - strandat 2469.242 kb on - strandat 2469.268 kb on - strandat 2469.280 kb on + strandat 2469.362 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.508 kb on + strand, within Ga0059261_2369at 2469.509 kb on - strand, within Ga0059261_2369at 2469.509 kb on - strand, within Ga0059261_2369at 2469.548 kb on + strand, within Ga0059261_2369at 2469.594 kb on + strand, within Ga0059261_2369at 2469.594 kb on + strand, within Ga0059261_2369at 2469.594 kb on + strand, within Ga0059261_2369at 2469.595 kb on - strand, within Ga0059261_2369at 2469.595 kb on - strand, within Ga0059261_2369at 2469.595 kb on - strand, within Ga0059261_2369at 2469.595 kb on - strand, within Ga0059261_2369at 2469.833 kb on + strandat 2469.833 kb on + strandat 2469.833 kb on + strandat 2469.834 kb on - strandat 2469.834 kb on - strandat 2469.834 kb on - strandat 2469.889 kb on + strandat 2469.901 kb on - strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.963 kb on + strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2469.964 kb on - strandat 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.150 kb on + strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.151 kb on - strand, within Ga0059261_2370at 2470.175 kb on + strand, within Ga0059261_2370at 2470.176 kb on - strand, within Ga0059261_2370at 2470.176 kb on - strand, within Ga0059261_2370

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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2,467,843 + Ga0059261_2367 0.14 +0.5
2,467,843 + Ga0059261_2367 0.14 -0.7
2,467,843 + Ga0059261_2367 0.14 +0.2
2,467,843 + Ga0059261_2367 0.14 -0.0
2,467,843 + Ga0059261_2367 0.14 +0.0
2,467,844 - Ga0059261_2367 0.14 -0.3
2,467,844 - Ga0059261_2367 0.14 -0.8
2,467,951 + Ga0059261_2367 0.23 -0.2
2,467,951 + Ga0059261_2367 0.23 +0.1
2,467,951 + Ga0059261_2367 0.23 -0.2
2,467,951 + Ga0059261_2367 0.23 -0.1
2,467,952 - Ga0059261_2367 0.23 -0.5
2,468,155 + Ga0059261_2367 0.41 +0.1
2,468,155 + Ga0059261_2367 0.41 -2.1
2,468,155 + Ga0059261_2367 0.41 +1.1
2,468,155 + Ga0059261_2367 0.41 +0.9
2,468,155 + Ga0059261_2367 0.41 -0.1
2,468,155 + Ga0059261_2367 0.41 +0.1
2,468,155 + Ga0059261_2367 0.41 +1.5
2,468,155 + Ga0059261_2367 0.41 +0.5
2,468,156 - -1.3
2,468,156 - Ga0059261_2367 0.41 +0.5
2,468,156 - Ga0059261_2367 0.41 +0.5
2,468,156 - Ga0059261_2367 0.41 +0.5
2,468,158 - Ga0059261_2367 0.41 -0.7
2,468,189 + Ga0059261_2367 0.44 -0.4
2,468,189 + Ga0059261_2367 0.44 +0.1
2,468,189 + Ga0059261_2367 0.44 -0.2
2,468,189 + Ga0059261_2367 0.44 +1.3
2,468,190 - Ga0059261_2367 0.44 +0.7
2,468,190 - Ga0059261_2367 0.44 +0.1
2,468,332 + Ga0059261_2367 0.56 +0.3
2,468,333 - Ga0059261_2367 0.56 -0.9
2,468,333 - Ga0059261_2367 0.56 +0.1
2,468,333 - Ga0059261_2367 0.56 +1.8
2,468,374 + Ga0059261_2367 0.60 +0.0
2,468,374 + Ga0059261_2367 0.60 +0.1
2,468,374 + Ga0059261_2367 0.60 +0.8
2,468,375 - Ga0059261_2367 0.60 +0.5
2,468,467 + Ga0059261_2367 0.68 +0.8
2,468,467 + Ga0059261_2367 0.68 -0.1
2,468,467 + Ga0059261_2367 0.68 -0.2
2,468,467 + Ga0059261_2367 0.68 -0.0
2,468,468 - Ga0059261_2367 0.68 -0.2
2,468,813 + -0.2
2,468,814 - -1.0
2,468,814 - -0.2
2,469,089 + Ga0059261_2368 0.70 -0.1
2,469,089 + Ga0059261_2368 0.70 -0.5
2,469,089 + Ga0059261_2368 0.70 -1.1
2,469,153 + Ga0059261_2368 0.88 -0.3
2,469,153 + Ga0059261_2368 0.88 -0.7
2,469,242 - -3.2
2,469,242 - -0.1
2,469,268 - +1.5
2,469,280 + -0.3
2,469,362 + Ga0059261_2369 0.14 -0.3
2,469,508 + Ga0059261_2369 0.40 +0.9
2,469,508 + Ga0059261_2369 0.40 +0.4
2,469,508 + Ga0059261_2369 0.40 -0.9
2,469,508 + Ga0059261_2369 0.40 +1.5
2,469,508 + Ga0059261_2369 0.40 -0.3
2,469,508 + Ga0059261_2369 0.40 -0.4
2,469,508 + Ga0059261_2369 0.40 -0.2
2,469,509 - Ga0059261_2369 0.40 -0.3
2,469,509 - Ga0059261_2369 0.40 -0.4
2,469,548 + Ga0059261_2369 0.47 +0.8
2,469,594 + Ga0059261_2369 0.55 -0.3
2,469,594 + Ga0059261_2369 0.55 +0.7
2,469,594 + Ga0059261_2369 0.55 +0.1
2,469,595 - Ga0059261_2369 0.55 -0.8
2,469,595 - Ga0059261_2369 0.55 +0.2
2,469,595 - Ga0059261_2369 0.55 +0.3
2,469,595 - Ga0059261_2369 0.55 -0.9
2,469,833 + -0.4
2,469,833 + -0.3
2,469,833 + +0.2
2,469,834 - -0.3
2,469,834 - -0.0
2,469,834 - +0.3
2,469,889 + -0.9
2,469,901 - +0.3
2,469,963 + +0.1
2,469,963 + -0.2
2,469,963 + -1.3
2,469,963 + +2.1
2,469,963 + -0.2
2,469,963 + +0.5
2,469,963 + -0.2
2,469,963 + +0.8
2,469,963 + -0.4
2,469,963 + +0.0
2,469,963 + +1.5
2,469,964 - +0.9
2,469,964 - +0.8
2,469,964 - -1.7
2,469,964 - +1.5
2,469,964 - -0.7
2,469,964 - +0.5
2,469,964 - -0.7
2,469,964 - -0.1
2,469,964 - +0.1
2,470,150 + Ga0059261_2370 0.33 -0.3
2,470,150 + Ga0059261_2370 0.33 +0.0
2,470,150 + Ga0059261_2370 0.33 -2.1
2,470,150 + Ga0059261_2370 0.33 -0.2
2,470,150 + Ga0059261_2370 0.33 +1.1
2,470,150 + Ga0059261_2370 0.33 +0.2
2,470,150 + Ga0059261_2370 0.33 +0.2
2,470,150 + Ga0059261_2370 0.33 +0.5
2,470,150 + Ga0059261_2370 0.33 -0.3
2,470,150 + Ga0059261_2370 0.33 +0.1
2,470,150 + Ga0059261_2370 0.33 +0.1
2,470,150 + Ga0059261_2370 0.33 -0.3
2,470,150 + Ga0059261_2370 0.33 +0.1
2,470,150 + Ga0059261_2370 0.33 +0.9
2,470,151 - Ga0059261_2370 0.34 -0.1
2,470,151 - Ga0059261_2370 0.34 -0.5
2,470,151 - Ga0059261_2370 0.34 -0.1
2,470,151 - Ga0059261_2370 0.34 +0.1
2,470,151 - Ga0059261_2370 0.34 +0.4
2,470,151 - Ga0059261_2370 0.34 -0.3
2,470,151 - Ga0059261_2370 0.34 -0.1
2,470,151 - Ga0059261_2370 0.34 +0.1
2,470,151 - Ga0059261_2370 0.34 +0.4
2,470,151 - Ga0059261_2370 0.34 -0.2
2,470,151 - Ga0059261_2370 0.34 +0.6
2,470,151 - Ga0059261_2370 0.34 +0.1
2,470,151 - Ga0059261_2370 0.34 -0.3
2,470,151 - Ga0059261_2370 0.34 +0.3
2,470,151 - Ga0059261_2370 0.34 -0.7
2,470,151 - Ga0059261_2370 0.34 +0.5
2,470,151 - Ga0059261_2370 0.34 -0.1
2,470,151 - Ga0059261_2370 0.34 +0.7
2,470,151 - Ga0059261_2370 0.34 -1.5
2,470,151 - Ga0059261_2370 0.34 +0.4
2,470,151 - Ga0059261_2370 0.34 +0.2
2,470,175 + Ga0059261_2370 0.40 -0.2
2,470,176 - Ga0059261_2370 0.40 -0.1
2,470,176 - Ga0059261_2370 0.40 +0.5

Or see this region's nucleotide sequence