Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2124

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_2123 and Ga0059261_2124 are separated by 39 nucleotidesGa0059261_2124 and Ga0059261_2125 are separated by 90 nucleotides Ga0059261_2123: Ga0059261_2123 - Geranylgeranyl pyrophosphate synthase, at 2,237,474 to 2,238,487 _2123 Ga0059261_2124: Ga0059261_2124 - hypothetical protein, at 2,238,527 to 2,238,739 _2124 Ga0059261_2125: Ga0059261_2125 - ATP-dependent helicase HrpB, at 2,238,830 to 2,241,286 _2125 Position (kb) 2238 2239Strain fitness (log2 ratio) -1 0 1 2at 2238.528 kb on + strandat 2238.528 kb on + strandat 2238.528 kb on + strandat 2238.528 kb on + strandat 2238.529 kb on - strandat 2238.529 kb on - strandat 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.617 kb on + strand, within Ga0059261_2124at 2238.618 kb on - strand, within Ga0059261_2124at 2238.618 kb on - strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.633 kb on + strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.634 kb on - strand, within Ga0059261_2124at 2238.687 kb on + strand, within Ga0059261_2124at 2238.687 kb on + strand, within Ga0059261_2124at 2238.688 kb on - strand, within Ga0059261_2124at 2238.688 kb on - strand, within Ga0059261_2124at 2238.818 kb on + strandat 2238.819 kb on - strandat 2238.819 kb on - strandat 2238.901 kb on - strandat 2239.716 kb on - strand, within Ga0059261_2125

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
2,238,528 + +0.6
2,238,528 + +0.6
2,238,528 + +0.9
2,238,528 + -0.1
2,238,529 - -0.5
2,238,529 - +2.0
2,238,617 + Ga0059261_2124 0.42 +1.1
2,238,617 + Ga0059261_2124 0.42 -0.2
2,238,617 + Ga0059261_2124 0.42 +2.5
2,238,617 + Ga0059261_2124 0.42 +0.6
2,238,617 + Ga0059261_2124 0.42 +0.8
2,238,617 + Ga0059261_2124 0.42 +1.5
2,238,618 - Ga0059261_2124 0.43 +0.8
2,238,618 - Ga0059261_2124 0.43 +2.5
2,238,633 + Ga0059261_2124 0.50 +0.5
2,238,633 + Ga0059261_2124 0.50 +0.1
2,238,633 + Ga0059261_2124 0.50 +2.5
2,238,633 + Ga0059261_2124 0.50 +0.9
2,238,633 + Ga0059261_2124 0.50 -0.7
2,238,633 + Ga0059261_2124 0.50 +0.6
2,238,633 + Ga0059261_2124 0.50 +0.3
2,238,633 + Ga0059261_2124 0.50 +0.4
2,238,634 - Ga0059261_2124 0.50 +0.9
2,238,634 - Ga0059261_2124 0.50 +0.9
2,238,634 - Ga0059261_2124 0.50 -0.3
2,238,634 - Ga0059261_2124 0.50 +0.5
2,238,634 - Ga0059261_2124 0.50 +1.7
2,238,634 - Ga0059261_2124 0.50 +0.9
2,238,687 + Ga0059261_2124 0.75 +0.7
2,238,687 + Ga0059261_2124 0.75 +0.5
2,238,688 - Ga0059261_2124 0.76 +1.5
2,238,688 - Ga0059261_2124 0.76 +1.5
2,238,818 + +1.3
2,238,819 - +0.7
2,238,819 - +0.6
2,238,901 - +1.2
2,239,716 - Ga0059261_2125 0.36 +1.2

Or see this region's nucleotide sequence