Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1011

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1009 and Ga0059261_1010 are separated by 100 nucleotidesGa0059261_1010 and Ga0059261_1011 are separated by 39 nucleotidesGa0059261_1011 and Ga0059261_1012 overlap by 4 nucleotidesGa0059261_1012 and Ga0059261_1013 are separated by 121 nucleotides Ga0059261_1009: Ga0059261_1009 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 1,047,661 to 1,048,167 _1009 Ga0059261_1010: Ga0059261_1010 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 1,048,268 to 1,048,918 _1010 Ga0059261_1011: Ga0059261_1011 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 1,048,958 to 1,049,995 _1011 Ga0059261_1012: Ga0059261_1012 - EF hand, at 1,049,992 to 1,050,483 _1012 Ga0059261_1013: Ga0059261_1013 - Predicted transcriptional regulators, at 1,050,605 to 1,051,357 _1013 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.165 kb on + strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.166 kb on - strandat 1048.249 kb on + strandat 1048.250 kb on - strandat 1048.334 kb on + strand, within Ga0059261_1010at 1048.334 kb on + strand, within Ga0059261_1010at 1048.334 kb on + strand, within Ga0059261_1010at 1048.334 kb on + strand, within Ga0059261_1010at 1048.334 kb on + strand, within Ga0059261_1010at 1048.334 kb on + strand, within Ga0059261_1010at 1048.334 kb on + strand, within Ga0059261_1010at 1048.335 kb on - strand, within Ga0059261_1010at 1048.335 kb on - strand, within Ga0059261_1010at 1048.335 kb on - strand, within Ga0059261_1010at 1048.335 kb on - strand, within Ga0059261_1010at 1048.335 kb on - strand, within Ga0059261_1010at 1048.499 kb on + strand, within Ga0059261_1010at 1048.499 kb on + strand, within Ga0059261_1010at 1048.500 kb on - strand, within Ga0059261_1010at 1048.613 kb on + strand, within Ga0059261_1010at 1048.613 kb on + strand, within Ga0059261_1010at 1048.613 kb on + strand, within Ga0059261_1010at 1048.613 kb on + strand, within Ga0059261_1010at 1048.614 kb on - strand, within Ga0059261_1010at 1048.724 kb on + strand, within Ga0059261_1010at 1048.724 kb on + strand, within Ga0059261_1010at 1048.724 kb on + strand, within Ga0059261_1010at 1048.724 kb on + strand, within Ga0059261_1010at 1048.724 kb on + strand, within Ga0059261_1010at 1048.725 kb on - strand, within Ga0059261_1010at 1048.725 kb on - strand, within Ga0059261_1010at 1048.726 kb on + strand, within Ga0059261_1010at 1048.726 kb on + strand, within Ga0059261_1010at 1048.727 kb on - strand, within Ga0059261_1010at 1048.727 kb on - strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.760 kb on + strand, within Ga0059261_1010at 1048.761 kb on - strand, within Ga0059261_1010at 1048.761 kb on - strand, within Ga0059261_1010at 1048.761 kb on - strand, within Ga0059261_1010at 1048.761 kb on - strand, within Ga0059261_1010at 1048.761 kb on - strand, within Ga0059261_1010at 1048.820 kb on + strand, within Ga0059261_1010at 1048.820 kb on + strand, within Ga0059261_1010at 1048.820 kb on + strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.821 kb on - strand, within Ga0059261_1010at 1048.823 kb on - strand, within Ga0059261_1010at 1048.847 kb on + strand, within Ga0059261_1010at 1048.848 kb on - strand, within Ga0059261_1010at 1049.399 kb on + strand, within Ga0059261_1011at 1049.399 kb on + strand, within Ga0059261_1011at 1049.400 kb on - strand, within Ga0059261_1011at 1049.400 kb on - strand, within Ga0059261_1011at 1049.400 kb on - strand, within Ga0059261_1011at 1049.400 kb on - strand, within Ga0059261_1011at 1049.400 kb on - strand, within Ga0059261_1011at 1049.400 kb on - strand, within Ga0059261_1011at 1049.401 kb on + strand, within Ga0059261_1011at 1049.402 kb on - strand, within Ga0059261_1011at 1049.402 kb on - strand, within Ga0059261_1011at 1049.445 kb on - strand, within Ga0059261_1011at 1049.445 kb on - strand, within Ga0059261_1011at 1049.807 kb on + strand, within Ga0059261_1011at 1049.915 kb on + strandat 1049.926 kb on + strandat 1049.926 kb on + strandat 1049.926 kb on + strandat 1049.926 kb on + strandat 1049.926 kb on + strandat 1049.926 kb on + strandat 1049.926 kb on + strandat 1049.927 kb on - strandat 1049.927 kb on - strandat 1049.927 kb on - strandat 1049.927 kb on - strandat 1049.927 kb on - strandat 1049.927 kb on - strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.948 kb on + strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.949 kb on - strandat 1049.950 kb on + strandat 1049.950 kb on + strandat 1049.950 kb on + strandat 1049.950 kb on + strandat 1049.950 kb on + strandat 1049.950 kb on + strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.951 kb on - strandat 1049.954 kb on + strandat 1049.954 kb on + strandat 1049.954 kb on + strandat 1049.954 kb on + strandat 1049.954 kb on + strandat 1049.954 kb on + strandat 1049.955 kb on - strandat 1049.955 kb on - strandat 1049.955 kb on - strandat 1049.955 kb on - strandat 1049.955 kb on - strandat 1049.955 kb on - strandat 1050.229 kb on + strand, within Ga0059261_1012at 1050.229 kb on + strand, within Ga0059261_1012at 1050.229 kb on + strand, within Ga0059261_1012at 1050.229 kb on + strand, within Ga0059261_1012at 1050.229 kb on + strand, within Ga0059261_1012at 1050.229 kb on + strand, within Ga0059261_1012at 1050.229 kb on + strand, within Ga0059261_1012at 1050.230 kb on - strand, within Ga0059261_1012at 1050.230 kb on - strand, within Ga0059261_1012at 1050.230 kb on - strand, within Ga0059261_1012at 1050.230 kb on - strand, within Ga0059261_1012at 1050.230 kb on - strand, within Ga0059261_1012at 1050.230 kb on - strand, within Ga0059261_1012at 1050.232 kb on - strand, within Ga0059261_1012at 1050.232 kb on - strand, within Ga0059261_1012at 1050.232 kb on - strand, within Ga0059261_1012at 1050.232 kb on - strand, within Ga0059261_1012at 1050.481 kb on + strandat 1050.482 kb on - strandat 1050.529 kb on - strandat 1050.534 kb on + strandat 1050.534 kb on + strandat 1050.534 kb on + strandat 1050.534 kb on + strandat 1050.534 kb on + strandat 1050.534 kb on + strandat 1050.534 kb on + strandat 1050.535 kb on - strandat 1050.535 kb on - strandat 1050.535 kb on - strandat 1050.535 kb on - strandat 1050.535 kb on - strandat 1050.535 kb on - strandat 1050.606 kb on + strandat 1050.607 kb on - strandat 1050.607 kb on - strandat 1050.607 kb on - strandat 1050.607 kb on - strandat 1050.624 kb on + strandat 1050.681 kb on + strand, within Ga0059261_1013at 1050.681 kb on + strand, within Ga0059261_1013at 1050.681 kb on + strand, within Ga0059261_1013at 1050.681 kb on + strand, within Ga0059261_1013at 1050.681 kb on + strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.682 kb on - strand, within Ga0059261_1013at 1050.711 kb on + strand, within Ga0059261_1013at 1050.711 kb on + strandat 1050.712 kb on - strand, within Ga0059261_1013at 1050.712 kb on - strand, within Ga0059261_1013at 1050.712 kb on - strand, within Ga0059261_1013at 1050.712 kb on - strand, within Ga0059261_1013at 1050.712 kb on - strand, within Ga0059261_1013at 1050.757 kb on + strand, within Ga0059261_1013at 1050.757 kb on + strand, within Ga0059261_1013at 1050.757 kb on + strand, within Ga0059261_1013at 1050.758 kb on - strand, within Ga0059261_1013at 1050.758 kb on - strand, within Ga0059261_1013at 1050.774 kb on + strand, within Ga0059261_1013at 1050.774 kb on + strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013at 1050.775 kb on - strand, within Ga0059261_1013

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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1,048,165 + -0.1
1,048,165 + -0.3
1,048,165 + -0.1
1,048,165 + +0.1
1,048,165 + -0.4
1,048,165 + -0.1
1,048,165 + -2.1
1,048,165 + +0.9
1,048,165 + +0.6
1,048,165 + +0.3
1,048,165 + -0.8
1,048,166 - +0.4
1,048,166 - -0.4
1,048,166 - +0.1
1,048,166 - -0.1
1,048,166 - +0.3
1,048,166 - -0.3
1,048,166 - -0.7
1,048,166 - +0.2
1,048,166 - -0.1
1,048,249 + +0.4
1,048,250 - -1.1
1,048,334 + Ga0059261_1010 0.10 -1.5
1,048,334 + Ga0059261_1010 0.10 -0.4
1,048,334 + Ga0059261_1010 0.10 -1.3
1,048,334 + Ga0059261_1010 0.10 -0.2
1,048,334 + Ga0059261_1010 0.10 +1.7
1,048,334 + Ga0059261_1010 0.10 +0.5
1,048,334 + Ga0059261_1010 0.10 -0.3
1,048,335 - Ga0059261_1010 0.10 +0.3
1,048,335 - Ga0059261_1010 0.10 -1.0
1,048,335 - Ga0059261_1010 0.10 -0.7
1,048,335 - Ga0059261_1010 0.10 -1.0
1,048,335 - Ga0059261_1010 0.10 -2.2
1,048,499 + Ga0059261_1010 0.35 -2.8
1,048,499 + Ga0059261_1010 0.35 +0.5
1,048,500 - Ga0059261_1010 0.36 -0.9
1,048,613 + Ga0059261_1010 0.53 -0.3
1,048,613 + Ga0059261_1010 0.53 +0.4
1,048,613 + Ga0059261_1010 0.53 -1.0
1,048,613 + Ga0059261_1010 0.53 +2.3
1,048,614 - Ga0059261_1010 0.53 -2.1
1,048,724 + Ga0059261_1010 0.70 -0.7
1,048,724 + Ga0059261_1010 0.70 -0.6
1,048,724 + Ga0059261_1010 0.70 -2.4
1,048,724 + Ga0059261_1010 0.70 -0.9
1,048,724 + Ga0059261_1010 0.70 -1.0
1,048,725 - Ga0059261_1010 0.70 -1.8
1,048,725 - Ga0059261_1010 0.70 -1.0
1,048,726 + Ga0059261_1010 0.70 -1.6
1,048,726 + Ga0059261_1010 0.70 +0.3
1,048,727 - Ga0059261_1010 0.71 -0.1
1,048,727 - Ga0059261_1010 0.71 -0.9
1,048,760 + Ga0059261_1010 0.76 -0.1
1,048,760 + Ga0059261_1010 0.76 -1.0
1,048,760 + Ga0059261_1010 0.76 -1.8
1,048,760 + Ga0059261_1010 0.76 -0.7
1,048,760 + Ga0059261_1010 0.76 +0.0
1,048,760 + Ga0059261_1010 0.76 -1.0
1,048,760 + Ga0059261_1010 0.76 -0.5
1,048,760 + Ga0059261_1010 0.76 +0.1
1,048,760 + Ga0059261_1010 0.76 -0.2
1,048,760 + Ga0059261_1010 0.76 -0.5
1,048,761 - Ga0059261_1010 0.76 -2.9
1,048,761 - Ga0059261_1010 0.76 -0.2
1,048,761 - Ga0059261_1010 0.76 -0.6
1,048,761 - Ga0059261_1010 0.76 -1.2
1,048,761 - Ga0059261_1010 0.76 -0.5
1,048,820 + Ga0059261_1010 0.85 -1.5
1,048,820 + Ga0059261_1010 0.85 -0.5
1,048,820 + Ga0059261_1010 0.85 -0.8
1,048,821 - Ga0059261_1010 0.85 -0.7
1,048,821 - Ga0059261_1010 0.85 -1.4
1,048,821 - Ga0059261_1010 0.85 -2.0
1,048,821 - Ga0059261_1010 0.85 +0.5
1,048,821 - Ga0059261_1010 0.85 -0.5
1,048,821 - Ga0059261_1010 0.85 -1.3
1,048,821 - Ga0059261_1010 0.85 -0.7
1,048,821 - Ga0059261_1010 0.85 -0.8
1,048,821 - Ga0059261_1010 0.85 -1.0
1,048,823 - Ga0059261_1010 0.85 -1.5
1,048,847 + Ga0059261_1010 0.89 +0.3
1,048,848 - Ga0059261_1010 0.89 +0.1
1,049,399 + Ga0059261_1011 0.42 -0.5
1,049,399 + Ga0059261_1011 0.42 +0.1
1,049,400 - Ga0059261_1011 0.43 -0.2
1,049,400 - Ga0059261_1011 0.43 +0.4
1,049,400 - Ga0059261_1011 0.43 +0.5
1,049,400 - Ga0059261_1011 0.43 -2.0
1,049,400 - Ga0059261_1011 0.43 -0.2
1,049,400 - Ga0059261_1011 0.43 +0.2
1,049,401 + Ga0059261_1011 0.43 -0.3
1,049,402 - Ga0059261_1011 0.43 -0.3
1,049,402 - Ga0059261_1011 0.43 -0.3
1,049,445 - Ga0059261_1011 0.47 -0.3
1,049,445 - Ga0059261_1011 0.47 -0.8
1,049,807 + Ga0059261_1011 0.82 -1.1
1,049,915 + -0.0
1,049,926 + -0.3
1,049,926 + +0.6
1,049,926 + -0.5
1,049,926 + -0.7
1,049,926 + -0.9
1,049,926 + -0.7
1,049,926 + -0.8
1,049,927 - -0.1
1,049,927 - -0.2
1,049,927 - -0.0
1,049,927 - -1.3
1,049,927 - +0.1
1,049,927 - -0.4
1,049,948 + -1.3
1,049,948 + -0.4
1,049,948 + +0.5
1,049,948 + -0.5
1,049,948 + -1.3
1,049,948 + -0.1
1,049,948 + -1.3
1,049,948 + -0.8
1,049,949 - -0.3
1,049,949 - -0.0
1,049,949 - -1.5
1,049,949 - +0.6
1,049,949 - -0.8
1,049,949 - +1.3
1,049,949 - -0.6
1,049,949 - -0.6
1,049,949 - -0.0
1,049,949 - +0.7
1,049,949 - -1.1
1,049,949 - -2.4
1,049,949 - -0.3
1,049,949 - -1.7
1,049,949 - +0.1
1,049,950 + +0.5
1,049,950 + -0.3
1,049,950 + +0.3
1,049,950 + +1.7
1,049,950 + +0.3
1,049,950 + +0.7
1,049,951 - -1.0
1,049,951 - -0.4
1,049,951 - -0.4
1,049,951 - -1.0
1,049,951 - -1.5
1,049,951 - -0.2
1,049,951 - +0.3
1,049,951 - -0.5
1,049,951 - -1.3
1,049,951 - +0.7
1,049,951 - +0.2
1,049,951 - -0.3
1,049,951 - -1.8
1,049,954 + +0.1
1,049,954 + +0.7
1,049,954 + -0.7
1,049,954 + -1.0
1,049,954 + -1.0
1,049,954 + -0.0
1,049,955 - -1.4
1,049,955 - -1.6
1,049,955 - +0.6
1,049,955 - -0.8
1,049,955 - -0.4
1,049,955 - +0.6
1,050,229 + Ga0059261_1012 0.48 -1.3
1,050,229 + Ga0059261_1012 0.48 -0.3
1,050,229 + Ga0059261_1012 0.48 +0.1
1,050,229 + Ga0059261_1012 0.48 -0.8
1,050,229 + Ga0059261_1012 0.48 +0.2
1,050,229 + Ga0059261_1012 0.48 -0.1
1,050,229 + Ga0059261_1012 0.48 -0.1
1,050,230 - Ga0059261_1012 0.48 +1.1
1,050,230 - Ga0059261_1012 0.48 +1.8
1,050,230 - Ga0059261_1012 0.48 -0.2
1,050,230 - Ga0059261_1012 0.48 -0.6
1,050,230 - Ga0059261_1012 0.48 -0.3
1,050,230 - Ga0059261_1012 0.48 -0.4
1,050,232 - Ga0059261_1012 0.49 -0.9
1,050,232 - Ga0059261_1012 0.49 +0.3
1,050,232 - Ga0059261_1012 0.49 +0.0
1,050,232 - Ga0059261_1012 0.49 -0.2
1,050,481 + -0.4
1,050,482 - +1.3
1,050,529 - +0.3
1,050,534 + -1.0
1,050,534 + -0.7
1,050,534 + -0.6
1,050,534 + +2.3
1,050,534 + -0.3
1,050,534 + -0.1
1,050,534 + -0.6
1,050,535 - -0.5
1,050,535 - -0.2
1,050,535 - -1.0
1,050,535 - +0.5
1,050,535 - +0.2
1,050,535 - +0.3
1,050,606 + +0.6
1,050,607 - -0.6
1,050,607 - -0.6
1,050,607 - -0.1
1,050,607 - +0.4
1,050,624 + -0.6
1,050,681 + Ga0059261_1013 0.10 -0.9
1,050,681 + Ga0059261_1013 0.10 -0.5
1,050,681 + Ga0059261_1013 0.10 -0.2
1,050,681 + Ga0059261_1013 0.10 -0.2
1,050,681 + Ga0059261_1013 0.10 -0.3
1,050,682 - Ga0059261_1013 0.10 +0.8
1,050,682 - Ga0059261_1013 0.10 +0.7
1,050,682 - Ga0059261_1013 0.10 -0.6
1,050,682 - Ga0059261_1013 0.10 +0.2
1,050,682 - Ga0059261_1013 0.10 +0.3
1,050,682 - Ga0059261_1013 0.10 +0.9
1,050,682 - Ga0059261_1013 0.10 -0.1
1,050,682 - Ga0059261_1013 0.10 +0.1
1,050,682 - Ga0059261_1013 0.10 +0.3
1,050,682 - Ga0059261_1013 0.10 +0.9
1,050,711 + Ga0059261_1013 0.14 +0.7
1,050,711 + +0.3
1,050,712 - Ga0059261_1013 0.14 -0.1
1,050,712 - Ga0059261_1013 0.14 -0.3
1,050,712 - Ga0059261_1013 0.14 -0.1
1,050,712 - Ga0059261_1013 0.14 -0.5
1,050,712 - Ga0059261_1013 0.14 -1.0
1,050,757 + Ga0059261_1013 0.20 +0.1
1,050,757 + Ga0059261_1013 0.20 -0.1
1,050,757 + Ga0059261_1013 0.20 -1.2
1,050,758 - Ga0059261_1013 0.20 +0.4
1,050,758 - Ga0059261_1013 0.20 +0.4
1,050,774 + Ga0059261_1013 0.22 -0.4
1,050,774 + Ga0059261_1013 0.22 +1.3
1,050,775 - Ga0059261_1013 0.23 -0.1
1,050,775 - Ga0059261_1013 0.23 -0.5
1,050,775 - Ga0059261_1013 0.23 +0.5
1,050,775 - Ga0059261_1013 0.23 -1.1
1,050,775 - Ga0059261_1013 0.23 +0.2
1,050,775 - Ga0059261_1013 0.23 -0.2
1,050,775 - Ga0059261_1013 0.23 +0.3

Or see this region's nucleotide sequence