Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0090

Experiment: L-Glutamic (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0089 and Ga0059261_0090 are separated by 136 nucleotidesGa0059261_0090 and Ga0059261_0091 are separated by 71 nucleotides Ga0059261_0089: Ga0059261_0089 - trigger factor, at 80,556 to 82,166 _0089 Ga0059261_0090: Ga0059261_0090 - Glycosyltransferases involved in cell wall biogenesis, at 82,303 to 83,232 _0090 Ga0059261_0091: Ga0059261_0091 - Outer membrane protein V, at 83,304 to 84,134 _0091 Position (kb) 82 83 84Strain fitness (log2 ratio) -2 -1 0 1 2at 81.408 kb on - strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strandat 81.411 kb on + strandat 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.411 kb on + strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.412 kb on - strand, within Ga0059261_0089at 81.413 kb on + strand, within Ga0059261_0089at 81.413 kb on + strand, within Ga0059261_0089at 81.413 kb on + strand, within Ga0059261_0089at 81.414 kb on - strand, within Ga0059261_0089at 81.558 kb on + strand, within Ga0059261_0089at 81.705 kb on + strand, within Ga0059261_0089at 81.705 kb on + strand, within Ga0059261_0089at 81.706 kb on - strand, within Ga0059261_0089at 81.738 kb on + strand, within Ga0059261_0089at 81.738 kb on + strand, within Ga0059261_0089at 81.739 kb on - strand, within Ga0059261_0089at 81.739 kb on - strandat 81.786 kb on + strand, within Ga0059261_0089at 82.164 kb on + strandat 82.164 kb on + strandat 82.164 kb on + strandat 82.165 kb on - strandat 82.165 kb on - strandat 82.165 kb on - strandat 82.245 kb on + strandat 82.246 kb on - strandat 82.291 kb on + strandat 83.230 kb on + strandat 83.231 kb on - strandat 83.241 kb on + strandat 83.241 kb on + strandat 83.241 kb on + strandat 83.241 kb on + strandat 83.242 kb on - strandat 83.242 kb on - strandat 83.306 kb on - strandat 83.315 kb on - strandat 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strandat 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.446 kb on + strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.447 kb on - strand, within Ga0059261_0091at 83.497 kb on + strand, within Ga0059261_0091at 83.545 kb on + strand, within Ga0059261_0091at 83.545 kb on + strand, within Ga0059261_0091at 83.546 kb on - strand, within Ga0059261_0091at 83.546 kb on - strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.555 kb on + strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.556 kb on - strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.557 kb on + strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.558 kb on - strand, within Ga0059261_0091at 83.893 kb on + strand, within Ga0059261_0091at 83.893 kb on + strand, within Ga0059261_0091at 83.893 kb on + strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.894 kb on - strand, within Ga0059261_0091at 83.908 kb on + strand, within Ga0059261_0091at 83.909 kb on - strand, within Ga0059261_0091at 83.909 kb on - strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.944 kb on + strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strand, within Ga0059261_0091at 83.945 kb on - strandat 83.945 kb on - strand, within Ga0059261_0091at 83.974 kb on + strand, within Ga0059261_0091at 83.974 kb on + strand, within Ga0059261_0091at 83.974 kb on + strand, within Ga0059261_0091at 83.974 kb on + strandat 83.974 kb on + strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 83.975 kb on - strand, within Ga0059261_0091at 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.171 kb on + strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.172 kb on - strandat 84.227 kb on + strandat 84.228 kb on - strandat 84.228 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
remove
81,408 - Ga0059261_0089 0.53 -1.1
81,411 + Ga0059261_0089 0.53 -1.3
81,411 + Ga0059261_0089 0.53 -0.6
81,411 + Ga0059261_0089 0.53 -1.7
81,411 + -0.3
81,411 + +1.3
81,411 + Ga0059261_0089 0.53 -2.3
81,411 + Ga0059261_0089 0.53 -0.5
81,411 + Ga0059261_0089 0.53 -1.9
81,411 + Ga0059261_0089 0.53 -0.3
81,412 - Ga0059261_0089 0.53 -1.3
81,412 - Ga0059261_0089 0.53 -1.3
81,412 - Ga0059261_0089 0.53 -0.9
81,412 - Ga0059261_0089 0.53 -0.6
81,412 - Ga0059261_0089 0.53 -0.7
81,413 + Ga0059261_0089 0.53 -1.3
81,413 + Ga0059261_0089 0.53 -2.3
81,413 + Ga0059261_0089 0.53 -1.6
81,414 - Ga0059261_0089 0.53 -1.3
81,558 + Ga0059261_0089 0.62 +0.5
81,705 + Ga0059261_0089 0.71 -0.2
81,705 + Ga0059261_0089 0.71 -2.3
81,706 - Ga0059261_0089 0.71 -0.6
81,738 + Ga0059261_0089 0.73 -1.3
81,738 + Ga0059261_0089 0.73 -2.6
81,739 - Ga0059261_0089 0.73 +1.0
81,739 - -0.3
81,786 + Ga0059261_0089 0.76 -0.7
82,164 + +0.4
82,164 + +0.4
82,164 + +0.5
82,165 - +0.5
82,165 - -0.7
82,165 - -0.6
82,245 + +0.1
82,246 - +1.5
82,291 + +1.2
83,230 + -1.1
83,231 - +0.1
83,241 + -0.4
83,241 + -0.6
83,241 + +0.2
83,241 + +0.5
83,242 - +0.6
83,242 - -0.5
83,306 - -0.5
83,315 - +0.7
83,446 + Ga0059261_0091 0.17 +1.7
83,446 + Ga0059261_0091 0.17 -0.2
83,446 + +2.3
83,446 + Ga0059261_0091 0.17 -0.9
83,446 + Ga0059261_0091 0.17 -0.2
83,446 + Ga0059261_0091 0.17 +0.4
83,446 + Ga0059261_0091 0.17 -1.3
83,446 + Ga0059261_0091 0.17 -0.8
83,447 - Ga0059261_0091 0.17 +0.1
83,447 - Ga0059261_0091 0.17 -0.3
83,447 - Ga0059261_0091 0.17 -0.2
83,447 - Ga0059261_0091 0.17 -0.7
83,447 - Ga0059261_0091 0.17 +0.6
83,497 + Ga0059261_0091 0.23 +0.0
83,545 + Ga0059261_0091 0.29 -1.3
83,545 + Ga0059261_0091 0.29 -0.6
83,546 - Ga0059261_0091 0.29 -0.1
83,546 - Ga0059261_0091 0.29 +1.0
83,555 + Ga0059261_0091 0.30 +0.8
83,555 + Ga0059261_0091 0.30 -0.3
83,555 + Ga0059261_0091 0.30 +0.3
83,555 + Ga0059261_0091 0.30 -0.2
83,555 + Ga0059261_0091 0.30 +1.6
83,555 + Ga0059261_0091 0.30 +0.5
83,555 + Ga0059261_0091 0.30 -0.5
83,555 + Ga0059261_0091 0.30 -1.9
83,556 - Ga0059261_0091 0.30 -0.1
83,556 - Ga0059261_0091 0.30 +0.1
83,556 - Ga0059261_0091 0.30 +0.0
83,556 - Ga0059261_0091 0.30 -0.4
83,556 - Ga0059261_0091 0.30 +1.3
83,556 - Ga0059261_0091 0.30 -0.3
83,556 - Ga0059261_0091 0.30 +0.3
83,557 + Ga0059261_0091 0.30 +0.0
83,557 + Ga0059261_0091 0.30 +0.3
83,557 + Ga0059261_0091 0.30 -1.1
83,557 + Ga0059261_0091 0.30 +0.3
83,557 + Ga0059261_0091 0.30 +0.7
83,557 + Ga0059261_0091 0.30 +0.3
83,557 + Ga0059261_0091 0.30 +0.5
83,557 + Ga0059261_0091 0.30 +0.2
83,557 + Ga0059261_0091 0.30 +0.1
83,558 - Ga0059261_0091 0.31 -0.0
83,558 - Ga0059261_0091 0.31 +0.1
83,558 - Ga0059261_0091 0.31 +0.7
83,558 - Ga0059261_0091 0.31 +0.0
83,558 - Ga0059261_0091 0.31 -0.7
83,558 - Ga0059261_0091 0.31 -0.9
83,558 - Ga0059261_0091 0.31 +0.0
83,893 + Ga0059261_0091 0.71 +1.1
83,893 + Ga0059261_0091 0.71 -0.5
83,893 + Ga0059261_0091 0.71 -1.1
83,894 - Ga0059261_0091 0.71 -0.7
83,894 - Ga0059261_0091 0.71 -0.3
83,894 - Ga0059261_0091 0.71 -0.6
83,894 - Ga0059261_0091 0.71 +0.1
83,908 + Ga0059261_0091 0.73 +0.7
83,909 - Ga0059261_0091 0.73 -0.4
83,909 - Ga0059261_0091 0.73 -0.7
83,944 + Ga0059261_0091 0.77 +0.1
83,944 + Ga0059261_0091 0.77 +0.7
83,944 + Ga0059261_0091 0.77 -0.5
83,944 + Ga0059261_0091 0.77 -1.3
83,944 + Ga0059261_0091 0.77 +0.3
83,944 + Ga0059261_0091 0.77 +0.7
83,945 - Ga0059261_0091 0.77 +0.3
83,945 - Ga0059261_0091 0.77 +0.3
83,945 - Ga0059261_0091 0.77 -0.1
83,945 - Ga0059261_0091 0.77 -0.5
83,945 - +1.3
83,945 - Ga0059261_0091 0.77 -0.1
83,974 + Ga0059261_0091 0.81 +0.5
83,974 + Ga0059261_0091 0.81 +0.1
83,974 + Ga0059261_0091 0.81 +0.1
83,974 + +0.8
83,974 + Ga0059261_0091 0.81 -0.3
83,975 - Ga0059261_0091 0.81 +0.0
83,975 - Ga0059261_0091 0.81 -0.4
83,975 - Ga0059261_0091 0.81 +0.5
83,975 - Ga0059261_0091 0.81 +1.3
83,975 - Ga0059261_0091 0.81 +0.9
83,975 - Ga0059261_0091 0.81 +0.3
83,975 - Ga0059261_0091 0.81 -0.9
84,171 + +0.7
84,171 + +0.6
84,171 + +0.2
84,171 + +0.9
84,171 + -0.6
84,171 + +1.8
84,171 + -0.3
84,172 - -1.2
84,172 - +0.7
84,172 - +0.7
84,172 - -0.6
84,172 - +0.6
84,172 - -0.1
84,227 + -1.7
84,228 - -0.1
84,228 - +1.0

Or see this region's nucleotide sequence