Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_16240 and AO356_16245 overlap by 4 nucleotides AO356_16245 and AO356_16250 overlap by 11 nucleotides AO356_16250 and AO356_16255 are separated by 220 nucleotides AO356_16255 and AO356_16260 overlap by 8 nucleotides
AO356_16240: AO356_16240 - chromosome partitioning protein ParA, at 3,671,237 to 3,674,077
_16240
AO356_16245: AO356_16245 - chromosome partitioning protein, at 3,674,074 to 3,674,775
_16245
AO356_16250: AO356_16250 - hypothetical protein, at 3,674,765 to 3,676,045
_16250
AO356_16255: AO356_16255 - energy transducer TonB, at 3,676,266 to 3,677,006
_16255
AO356_16260: AO356_16260 - ribosomal-protein-alanine acetyltransferase, at 3,676,999 to 3,677,451
_16260
Position (kb)
3674
3675
3676
3677 Strain fitness (log2 ratio)
-1
0
1 at 3673.842 kb on + strand at 3673.842 kb on + strand at 3673.842 kb on + strand at 3673.843 kb on - strand at 3673.843 kb on - strand at 3673.843 kb on - strand at 3673.843 kb on - strand at 3673.863 kb on + strand at 3673.890 kb on + strand at 3673.891 kb on - strand at 3673.891 kb on - strand at 3674.591 kb on + strand, within AO356_16245 at 3674.591 kb on + strand, within AO356_16245 at 3674.591 kb on + strand, within AO356_16245 at 3674.591 kb on + strand, within AO356_16245 at 3674.591 kb on + strand, within AO356_16245 at 3674.592 kb on - strand, within AO356_16245 at 3674.592 kb on - strand, within AO356_16245 at 3674.592 kb on - strand, within AO356_16245 at 3674.592 kb on - strand, within AO356_16245 at 3674.594 kb on + strand, within AO356_16245 at 3674.594 kb on + strand, within AO356_16245 at 3674.594 kb on + strand, within AO356_16245 at 3674.595 kb on - strand, within AO356_16245 at 3674.595 kb on - strand, within AO356_16245 at 3674.595 kb on - strand, within AO356_16245 at 3674.595 kb on - strand, within AO356_16245 at 3674.595 kb on - strand, within AO356_16245 at 3674.682 kb on - strand, within AO356_16245 at 3674.711 kb on + strand at 3674.761 kb on + strand at 3674.762 kb on - strand at 3674.866 kb on - strand at 3674.928 kb on + strand, within AO356_16250 at 3675.123 kb on + strand, within AO356_16250 at 3675.123 kb on + strand, within AO356_16250 at 3675.123 kb on + strand, within AO356_16250 at 3675.123 kb on + strand, within AO356_16250 at 3675.123 kb on + strand, within AO356_16250 at 3675.124 kb on - strand, within AO356_16250 at 3675.124 kb on - strand, within AO356_16250 at 3675.124 kb on - strand, within AO356_16250 at 3675.129 kb on + strand, within AO356_16250 at 3675.129 kb on + strand, within AO356_16250 at 3675.129 kb on + strand, within AO356_16250 at 3675.129 kb on + strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.130 kb on - strand, within AO356_16250 at 3675.507 kb on + strand, within AO356_16250 at 3675.507 kb on + strand, within AO356_16250 at 3675.507 kb on + strand, within AO356_16250 at 3675.507 kb on + strand, within AO356_16250 at 3675.508 kb on - strand, within AO356_16250 at 3675.508 kb on - strand, within AO356_16250 at 3675.508 kb on - strand, within AO356_16250 at 3675.548 kb on + strand, within AO356_16250 at 3675.548 kb on + strand, within AO356_16250 at 3675.712 kb on - strand, within AO356_16250 at 3675.741 kb on + strand, within AO356_16250 at 3675.741 kb on + strand, within AO356_16250 at 3675.741 kb on + strand, within AO356_16250 at 3675.741 kb on + strand, within AO356_16250 at 3675.741 kb on + strand, within AO356_16250 at 3675.741 kb on + strand, within AO356_16250 at 3675.742 kb on - strand, within AO356_16250 at 3675.742 kb on - strand, within AO356_16250 at 3675.742 kb on - strand, within AO356_16250 at 3675.742 kb on - strand, within AO356_16250 at 3675.789 kb on + strand, within AO356_16250 at 3675.789 kb on + strand, within AO356_16250 at 3676.070 kb on + strand at 3676.071 kb on - strand at 3676.071 kb on - strand at 3676.085 kb on + strand at 3676.085 kb on + strand at 3676.085 kb on + strand at 3676.085 kb on + strand at 3676.086 kb on - strand at 3677.012 kb on + strand at 3677.012 kb on + strand at 3677.012 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,673,842 + +0.7 3,673,842 + +1.1 3,673,842 + +1.4 3,673,843 - +0.7 3,673,843 - -0.1 3,673,843 - -0.3 3,673,843 - +0.8 3,673,863 + -0.1 3,673,890 + +1.0 3,673,891 - -1.3 3,673,891 - -0.7 3,674,591 + AO356_16245 0.74 -0.0 3,674,591 + AO356_16245 0.74 +0.3 3,674,591 + AO356_16245 0.74 +1.0 3,674,591 + AO356_16245 0.74 +1.1 3,674,591 + AO356_16245 0.74 -0.2 3,674,592 - AO356_16245 0.74 +0.9 3,674,592 - AO356_16245 0.74 +0.4 3,674,592 - AO356_16245 0.74 +0.1 3,674,592 - AO356_16245 0.74 +0.1 3,674,594 + AO356_16245 0.74 +0.2 3,674,594 + AO356_16245 0.74 +0.8 3,674,594 + AO356_16245 0.74 -0.1 3,674,595 - AO356_16245 0.74 +0.2 3,674,595 - AO356_16245 0.74 +0.5 3,674,595 - AO356_16245 0.74 -0.5 3,674,595 - AO356_16245 0.74 -0.5 3,674,595 - AO356_16245 0.74 +1.1 3,674,682 - AO356_16245 0.87 -0.5 3,674,711 + +0.1 3,674,761 + -0.3 3,674,762 - +0.0 3,674,866 - +0.4 3,674,928 + AO356_16250 0.13 -1.2 3,675,123 + AO356_16250 0.28 -0.2 3,675,123 + AO356_16250 0.28 -0.8 3,675,123 + AO356_16250 0.28 +0.0 3,675,123 + AO356_16250 0.28 +0.4 3,675,123 + AO356_16250 0.28 +0.1 3,675,124 - AO356_16250 0.28 -0.0 3,675,124 - AO356_16250 0.28 -0.6 3,675,124 - AO356_16250 0.28 -0.7 3,675,129 + AO356_16250 0.28 +0.2 3,675,129 + AO356_16250 0.28 -0.6 3,675,129 + AO356_16250 0.28 +0.5 3,675,129 + AO356_16250 0.28 -0.1 3,675,130 - AO356_16250 0.28 -0.1 3,675,130 - AO356_16250 0.28 +0.4 3,675,130 - AO356_16250 0.28 -0.8 3,675,130 - AO356_16250 0.28 -0.4 3,675,130 - AO356_16250 0.28 +0.1 3,675,130 - AO356_16250 0.28 +1.1 3,675,130 - AO356_16250 0.28 -0.2 3,675,130 - AO356_16250 0.28 -0.5 3,675,130 - AO356_16250 0.28 -0.9 3,675,130 - AO356_16250 0.28 -0.5 3,675,130 - AO356_16250 0.28 +0.0 3,675,130 - AO356_16250 0.28 -0.2 3,675,130 - AO356_16250 0.28 -0.2 3,675,507 + AO356_16250 0.58 -0.5 3,675,507 + AO356_16250 0.58 +1.4 3,675,507 + AO356_16250 0.58 +0.3 3,675,507 + AO356_16250 0.58 +0.2 3,675,508 - AO356_16250 0.58 -0.8 3,675,508 - AO356_16250 0.58 +0.2 3,675,508 - AO356_16250 0.58 +0.6 3,675,548 + AO356_16250 0.61 -0.2 3,675,548 + AO356_16250 0.61 -0.5 3,675,712 - AO356_16250 0.74 +0.1 3,675,741 + AO356_16250 0.76 -0.8 3,675,741 + AO356_16250 0.76 -1.0 3,675,741 + AO356_16250 0.76 -0.6 3,675,741 + AO356_16250 0.76 -0.1 3,675,741 + AO356_16250 0.76 +0.2 3,675,741 + AO356_16250 0.76 -0.9 3,675,742 - AO356_16250 0.76 +1.1 3,675,742 - AO356_16250 0.76 -0.1 3,675,742 - AO356_16250 0.76 -0.3 3,675,742 - AO356_16250 0.76 -0.3 3,675,789 + AO356_16250 0.80 -1.1 3,675,789 + AO356_16250 0.80 -0.2 3,676,070 + -1.6 3,676,071 - -0.1 3,676,071 - +0.1 3,676,085 + +0.0 3,676,085 + +1.4 3,676,085 + -0.7 3,676,085 + +1.4 3,676,086 - -0.6 3,677,012 + -0.5 3,677,012 + +0.1 3,677,012 + +0.8
Or see this region's nucleotide sequence