Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03015 and AO356_03020 are separated by 29 nucleotides AO356_03020 and AO356_03025 are separated by 337 nucleotides AO356_03025 and AO356_03030 are separated by 2 nucleotides
AO356_03015: AO356_03015 - sodium:proton antiporter, at 671,413 to 673,125
_03015
AO356_03020: AO356_03020 - ammonium transporter, at 673,155 to 674,363
_03020
AO356_03025: AO356_03025 - hypothetical protein, at 674,701 to 675,015
_03025
AO356_03030: AO356_03030 - hypothetical protein, at 675,018 to 675,407
_03030
Position (kb) 673
674
675 Strain fitness (log2 ratio) -1
0
1 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.194 kb on + strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.195 kb on - strand, within AO356_03015 at 672.893 kb on + strand, within AO356_03015 at 672.894 kb on - strand, within AO356_03015 at 673.124 kb on - strand at 673.124 kb on - strand at 673.124 kb on - strand at 673.133 kb on + strand at 673.134 kb on - strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.142 kb on + strand at 673.143 kb on - strand at 673.143 kb on - strand at 673.143 kb on - strand at 673.143 kb on - strand at 673.205 kb on - strand at 673.205 kb on - strand at 673.205 kb on - strand at 673.207 kb on + strand at 673.207 kb on + strand at 673.207 kb on + strand at 673.208 kb on - strand at 673.208 kb on - strand at 673.208 kb on - strand at 673.208 kb on - strand at 673.258 kb on + strand at 673.259 kb on - strand at 674.024 kb on + strand, within AO356_03020 at 674.024 kb on + strand, within AO356_03020 at 674.093 kb on - strand, within AO356_03020 at 674.113 kb on - strand, within AO356_03020 at 674.170 kb on + strand, within AO356_03020 at 674.170 kb on + strand, within AO356_03020 at 674.171 kb on - strand, within AO356_03020 at 674.171 kb on - strand, within AO356_03020 at 674.316 kb on - strand at 674.316 kb on - strand at 674.482 kb on + strand at 674.482 kb on + strand at 674.483 kb on - strand at 674.483 kb on - strand at 674.532 kb on + strand at 674.533 kb on - strand at 674.597 kb on + strand at 674.597 kb on + strand at 674.597 kb on + strand at 674.598 kb on - strand at 674.598 kb on - strand at 674.598 kb on - strand at 674.626 kb on - strand at 674.662 kb on + strand at 674.662 kb on + strand at 674.663 kb on - strand at 674.686 kb on + strand at 674.915 kb on + strand, within AO356_03025 at 674.915 kb on + strand, within AO356_03025 at 674.916 kb on - strand, within AO356_03025 at 674.932 kb on + strand, within AO356_03025 at 674.932 kb on + strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.933 kb on - strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.936 kb on + strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.937 kb on - strand, within AO356_03025 at 674.960 kb on + strand, within AO356_03025 at 674.961 kb on - strand, within AO356_03025 at 675.241 kb on + strand, within AO356_03030 at 675.252 kb on + strand, within AO356_03030 at 675.252 kb on + strand, within AO356_03030 at 675.253 kb on - strand, within AO356_03030 at 675.288 kb on + strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.289 kb on - strand, within AO356_03030 at 675.336 kb on + strand, within AO356_03030 at 675.336 kb on + strand, within AO356_03030 at 675.337 kb on - strand, within AO356_03030 at 675.337 kb on - strand, within AO356_03030
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 672,194 + AO356_03015 0.46 -0.2 672,194 + AO356_03015 0.46 +0.5 672,194 + AO356_03015 0.46 -0.7 672,194 + AO356_03015 0.46 -0.3 672,194 + AO356_03015 0.46 -0.2 672,194 + AO356_03015 0.46 -0.4 672,194 + AO356_03015 0.46 -0.3 672,194 + AO356_03015 0.46 -0.1 672,194 + AO356_03015 0.46 +0.8 672,194 + AO356_03015 0.46 -0.1 672,194 + AO356_03015 0.46 -0.0 672,194 + AO356_03015 0.46 +1.0 672,195 - AO356_03015 0.46 +0.6 672,195 - AO356_03015 0.46 +0.3 672,195 - AO356_03015 0.46 +0.3 672,195 - AO356_03015 0.46 -0.9 672,893 + AO356_03015 0.86 +0.4 672,894 - AO356_03015 0.86 +0.0 673,124 - -0.7 673,124 - -0.3 673,124 - -0.2 673,133 + +0.3 673,134 - +0.9 673,142 + -0.8 673,142 + -0.8 673,142 + +0.6 673,142 + -0.6 673,142 + +0.2 673,143 - -0.7 673,143 - -0.3 673,143 - +0.8 673,143 - +0.4 673,205 - +0.3 673,205 - +1.0 673,205 - -0.3 673,207 + +0.2 673,207 + -0.1 673,207 + +0.2 673,208 - +0.1 673,208 - -0.1 673,208 - -0.1 673,208 - -0.5 673,258 + -0.4 673,259 - +1.5 674,024 + AO356_03020 0.72 -0.8 674,024 + AO356_03020 0.72 -0.5 674,093 - AO356_03020 0.78 -0.2 674,113 - AO356_03020 0.79 -0.1 674,170 + AO356_03020 0.84 -0.2 674,170 + AO356_03020 0.84 -0.1 674,171 - AO356_03020 0.84 -0.6 674,171 - AO356_03020 0.84 -1.5 674,316 - +0.4 674,316 - +0.5 674,482 + +0.4 674,482 + +0.1 674,483 - +1.0 674,483 - +0.6 674,532 + -0.5 674,533 - +0.8 674,597 + +0.4 674,597 + +0.0 674,597 + -0.3 674,598 - +0.6 674,598 - +1.0 674,598 - +0.5 674,626 - +0.3 674,662 + +0.5 674,662 + +0.4 674,663 - +1.0 674,686 + -0.6 674,915 + AO356_03025 0.68 -0.3 674,915 + AO356_03025 0.68 -0.8 674,916 - AO356_03025 0.68 +1.1 674,932 + AO356_03025 0.73 +0.4 674,932 + AO356_03025 0.73 -0.2 674,933 - AO356_03025 0.74 +1.0 674,933 - AO356_03025 0.74 +0.4 674,933 - AO356_03025 0.74 -0.2 674,933 - AO356_03025 0.74 +0.6 674,936 + AO356_03025 0.75 +0.1 674,936 + AO356_03025 0.75 -0.1 674,936 + AO356_03025 0.75 -0.2 674,936 + AO356_03025 0.75 +0.7 674,936 + AO356_03025 0.75 +0.3 674,937 - AO356_03025 0.75 +1.4 674,937 - AO356_03025 0.75 +1.0 674,937 - AO356_03025 0.75 +0.9 674,960 + AO356_03025 0.82 +1.6 674,961 - AO356_03025 0.83 +0.5 675,241 + AO356_03030 0.57 +0.3 675,252 + AO356_03030 0.60 -0.4 675,252 + AO356_03030 0.60 +0.5 675,253 - AO356_03030 0.60 +0.7 675,288 + AO356_03030 0.69 -0.5 675,289 - AO356_03030 0.69 +0.1 675,289 - AO356_03030 0.69 +1.2 675,289 - AO356_03030 0.69 +0.6 675,336 + AO356_03030 0.82 -0.8 675,336 + AO356_03030 0.82 -0.9 675,337 - AO356_03030 0.82 +0.2 675,337 - AO356_03030 0.82 +1.1
Or see this region's nucleotide sequence