Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00075 and AO356_00080 are separated by 85 nucleotides AO356_00080 and AO356_00085 are separated by 14 nucleotides AO356_00085 and AO356_00090 overlap by 4 nucleotides AO356_00090 and AO356_00095 overlap by 4 nucleotides
AO356_00075: AO356_00075 - cobyrinic acid a,c-diamide synthase, at 15,122 to 15,964
_00075
AO356_00080: AO356_00080 - hypothetical protein, at 16,050 to 16,259
_00080
AO356_00085: AO356_00085 - chromosome partitioning protein ParB, at 16,274 to 17,845
_00085
AO356_00090: AO356_00090 - hypothetical protein, at 17,842 to 18,390
_00090
AO356_00095: AO356_00095 - hypothetical protein, at 18,387 to 19,574
_00095
Position (kb) 16
17
18 Strain fitness (log2 ratio) -2
-1
0
1 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.404 kb on - strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.480 kb on + strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.509 kb on - strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.795 kb on - strand, within AO356_00075 at 15.935 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 16.044 kb on - strand at 16.107 kb on - strand, within AO356_00080 at 16.116 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.188 kb on + strand, within AO356_00080 at 16.373 kb on - strand at 16.378 kb on + strand at 16.409 kb on + strand at 16.446 kb on - strand, within AO356_00085 at 16.523 kb on + strand, within AO356_00085 at 16.524 kb on - strand, within AO356_00085 at 16.546 kb on + strand, within AO356_00085 at 16.547 kb on - strand, within AO356_00085 at 16.549 kb on + strand, within AO356_00085 at 16.550 kb on - strand, within AO356_00085 at 16.890 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.895 kb on - strand, within AO356_00085 at 17.117 kb on - strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085 at 17.320 kb on + strand, within AO356_00085 at 17.448 kb on + strand, within AO356_00085 at 17.448 kb on + strand, within AO356_00085 at 17.449 kb on - strand, within AO356_00085 at 17.449 kb on - strand, within AO356_00085 at 17.452 kb on + strand, within AO356_00085 at 17.453 kb on - strand, within AO356_00085 at 17.453 kb on - strand, within AO356_00085 at 17.483 kb on + strand, within AO356_00085 at 17.484 kb on - strand, within AO356_00085 at 17.484 kb on - strand, within AO356_00085 at 17.589 kb on + strand, within AO356_00085 at 17.589 kb on + strand, within AO356_00085 at 17.590 kb on - strand, within AO356_00085 at 17.590 kb on - strand, within AO356_00085 at 17.650 kb on - strand, within AO356_00085 at 17.676 kb on + strand, within AO356_00085 at 17.676 kb on + strand, within AO356_00085 at 17.677 kb on - strand, within AO356_00085 at 17.677 kb on - strand, within AO356_00085 at 17.677 kb on - strand, within AO356_00085 at 17.680 kb on - strand, within AO356_00085 at 17.688 kb on - strand at 17.688 kb on - strand at 17.688 kb on - strand at 17.688 kb on - strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.724 kb on + strand at 17.773 kb on + strand at 17.774 kb on - strand at 17.775 kb on + strand at 17.775 kb on + strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.776 kb on - strand at 17.956 kb on + strand, within AO356_00090 at 17.956 kb on + strand, within AO356_00090 at 17.956 kb on + strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 17.957 kb on - strand, within AO356_00090 at 18.129 kb on + strand, within AO356_00090 at 18.129 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.139 kb on + strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.140 kb on - strand, within AO356_00090 at 18.197 kb on + strand, within AO356_00090 at 18.198 kb on - strand, within AO356_00090 at 18.228 kb on - strand, within AO356_00090 at 18.272 kb on + strand, within AO356_00090 at 18.272 kb on + strand, within AO356_00090 at 18.272 kb on + strand, within AO356_00090 at 18.373 kb on + strand at 18.374 kb on - strand at 18.374 kb on - strand at 18.499 kb on + strand at 18.635 kb on + strand, within AO356_00095 at 18.635 kb on + strand, within AO356_00095 at 18.635 kb on + strand, within AO356_00095 at 18.635 kb on + strand, within AO356_00095 at 18.636 kb on - strand, within AO356_00095 at 18.636 kb on - strand, within AO356_00095 at 18.645 kb on + strand, within AO356_00095 at 18.663 kb on + strand, within AO356_00095 at 18.663 kb on + strand, within AO356_00095 at 18.790 kb on + strand, within AO356_00095 at 18.790 kb on + strand, within AO356_00095 at 18.804 kb on + strand, within AO356_00095 at 18.804 kb on + strand, within AO356_00095 at 18.804 kb on + strand, within AO356_00095 at 18.805 kb on - strand, within AO356_00095 at 18.805 kb on - strand, within AO356_00095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 15,337 - AO356_00075 0.26 +1.2 15,337 - AO356_00075 0.26 -0.2 15,337 - AO356_00075 0.26 -0.1 15,404 - AO356_00075 0.33 -0.6 15,411 + AO356_00075 0.34 -0.1 15,411 + AO356_00075 0.34 -0.8 15,411 + AO356_00075 0.34 -0.2 15,412 - AO356_00075 0.34 -1.0 15,412 - AO356_00075 0.34 +0.3 15,414 + AO356_00075 0.35 +1.2 15,414 + AO356_00075 0.35 +0.2 15,415 - AO356_00075 0.35 +0.5 15,415 - AO356_00075 0.35 +0.2 15,415 - AO356_00075 0.35 -0.2 15,480 + AO356_00075 0.42 +0.6 15,481 - AO356_00075 0.43 -0.1 15,481 - AO356_00075 0.43 +0.3 15,481 - AO356_00075 0.43 +0.6 15,481 - AO356_00075 0.43 -0.2 15,481 - AO356_00075 0.43 -0.4 15,508 + AO356_00075 0.46 +1.0 15,508 + AO356_00075 0.46 +1.6 15,509 - AO356_00075 0.46 +0.4 15,562 + AO356_00075 0.52 -0.2 15,562 + AO356_00075 0.52 +0.1 15,748 + AO356_00075 0.74 +0.2 15,748 + AO356_00075 0.74 +0.1 15,749 - AO356_00075 0.74 -2.5 15,749 - AO356_00075 0.74 +0.7 15,749 - AO356_00075 0.74 -0.4 15,766 - AO356_00075 0.76 +0.7 15,766 - AO356_00075 0.76 -1.0 15,775 - AO356_00075 0.77 -0.8 15,775 - AO356_00075 0.77 -1.5 15,775 - AO356_00075 0.77 +0.9 15,775 - AO356_00075 0.77 +0.5 15,795 - AO356_00075 0.80 +1.5 15,935 - -0.0 15,983 - -0.2 15,983 - +0.3 15,983 - -0.7 16,044 - -0.9 16,107 - AO356_00080 0.27 +0.6 16,116 + AO356_00080 0.31 +0.7 16,119 + AO356_00080 0.33 +0.3 16,119 + AO356_00080 0.33 -0.6 16,119 + AO356_00080 0.33 -1.3 16,120 - AO356_00080 0.33 -0.4 16,120 - AO356_00080 0.33 -1.1 16,120 - AO356_00080 0.33 -0.9 16,120 - AO356_00080 0.33 -0.1 16,120 - AO356_00080 0.33 +0.3 16,188 + AO356_00080 0.66 -0.2 16,373 - +0.8 16,378 + +0.2 16,409 + +1.2 16,446 - AO356_00085 0.11 -0.0 16,523 + AO356_00085 0.16 -1.3 16,524 - AO356_00085 0.16 -1.2 16,546 + AO356_00085 0.17 +0.3 16,547 - AO356_00085 0.17 +0.5 16,549 + AO356_00085 0.17 -1.5 16,550 - AO356_00085 0.18 -0.3 16,890 + AO356_00085 0.39 +0.3 16,894 + AO356_00085 0.39 +0.0 16,894 + AO356_00085 0.39 +0.0 16,895 - AO356_00085 0.40 +1.1 17,117 - AO356_00085 0.54 +0.8 17,236 + AO356_00085 0.61 +0.3 17,236 + AO356_00085 0.61 +1.1 17,237 - AO356_00085 0.61 +0.3 17,237 - AO356_00085 0.61 -0.4 17,320 + AO356_00085 0.67 -0.2 17,448 + AO356_00085 0.75 +0.5 17,448 + AO356_00085 0.75 +1.6 17,449 - AO356_00085 0.75 +1.0 17,449 - AO356_00085 0.75 -0.0 17,452 + AO356_00085 0.75 +0.1 17,453 - AO356_00085 0.75 +0.4 17,453 - AO356_00085 0.75 +0.1 17,483 + AO356_00085 0.77 +0.2 17,484 - AO356_00085 0.77 +0.5 17,484 - AO356_00085 0.77 +1.4 17,589 + AO356_00085 0.84 +0.5 17,589 + AO356_00085 0.84 +1.3 17,590 - AO356_00085 0.84 +0.5 17,590 - AO356_00085 0.84 -2.2 17,650 - AO356_00085 0.88 +0.6 17,676 + AO356_00085 0.89 +1.0 17,676 + AO356_00085 0.89 +0.9 17,677 - AO356_00085 0.89 +1.0 17,677 - AO356_00085 0.89 -1.7 17,677 - AO356_00085 0.89 +1.0 17,680 - AO356_00085 0.89 -0.6 17,688 - -0.1 17,688 - -0.7 17,688 - -0.4 17,688 - +0.6 17,724 + -1.0 17,724 + -0.2 17,724 + +0.7 17,724 + -0.2 17,724 + -0.0 17,724 + +0.1 17,773 + +0.2 17,774 - -0.1 17,775 + +0.1 17,775 + +0.2 17,776 - -0.0 17,776 - -0.5 17,776 - +0.1 17,776 - +0.6 17,776 - +1.2 17,956 + AO356_00090 0.21 -0.4 17,956 + AO356_00090 0.21 -0.3 17,956 + AO356_00090 0.21 -0.1 17,957 - AO356_00090 0.21 -0.3 17,957 - AO356_00090 0.21 +0.6 17,957 - AO356_00090 0.21 -0.3 17,957 - AO356_00090 0.21 -1.0 17,957 - AO356_00090 0.21 +0.2 17,957 - AO356_00090 0.21 -0.0 18,129 + AO356_00090 0.52 -0.6 18,129 + AO356_00090 0.52 +0.1 18,139 + AO356_00090 0.54 +0.0 18,139 + AO356_00090 0.54 +0.7 18,139 + AO356_00090 0.54 +0.6 18,139 + AO356_00090 0.54 -0.5 18,140 - AO356_00090 0.54 +1.6 18,140 - AO356_00090 0.54 -0.2 18,140 - AO356_00090 0.54 -1.9 18,140 - AO356_00090 0.54 +0.4 18,140 - AO356_00090 0.54 +0.2 18,140 - AO356_00090 0.54 +0.4 18,140 - AO356_00090 0.54 +0.0 18,197 + AO356_00090 0.65 +0.0 18,198 - AO356_00090 0.65 +0.2 18,228 - AO356_00090 0.70 +0.3 18,272 + AO356_00090 0.78 -1.4 18,272 + AO356_00090 0.78 -1.8 18,272 + AO356_00090 0.78 -0.6 18,373 + +0.1 18,374 - -0.3 18,374 - +0.5 18,499 + +0.1 18,635 + AO356_00095 0.21 +1.0 18,635 + AO356_00095 0.21 +0.5 18,635 + AO356_00095 0.21 -0.2 18,635 + AO356_00095 0.21 -1.4 18,636 - AO356_00095 0.21 +0.7 18,636 - AO356_00095 0.21 -1.3 18,645 + AO356_00095 0.22 -0.1 18,663 + AO356_00095 0.23 -0.1 18,663 + AO356_00095 0.23 -0.1 18,790 + AO356_00095 0.34 +1.1 18,790 + AO356_00095 0.34 +0.2 18,804 + AO356_00095 0.35 +0.2 18,804 + AO356_00095 0.35 +0.2 18,804 + AO356_00095 0.35 +0.0 18,805 - AO356_00095 0.35 -0.0 18,805 - AO356_00095 0.35 +0.4
Or see this region's nucleotide sequence