Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00070 and AO356_00075 are separated by 4 nucleotides AO356_00075 and AO356_00080 are separated by 85 nucleotides AO356_00080 and AO356_00085 are separated by 14 nucleotides
AO356_00070: AO356_00070 - hypothetical protein, at 14,887 to 15,117
_00070
AO356_00075: AO356_00075 - cobyrinic acid a,c-diamide synthase, at 15,122 to 15,964
_00075
AO356_00080: AO356_00080 - hypothetical protein, at 16,050 to 16,259
_00080
AO356_00085: AO356_00085 - chromosome partitioning protein ParB, at 16,274 to 17,845
_00085
Position (kb) 16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 15.090 kb on + strand, within AO356_00070 at 15.214 kb on - strand, within AO356_00075 at 15.214 kb on - strand, within AO356_00075 at 15.260 kb on + strand, within AO356_00075 at 15.260 kb on + strand, within AO356_00075 at 15.260 kb on + strand, within AO356_00075 at 15.261 kb on - strand, within AO356_00075 at 15.263 kb on + strand, within AO356_00075 at 15.263 kb on + strand, within AO356_00075 at 15.264 kb on - strand, within AO356_00075 at 15.264 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.337 kb on - strand, within AO356_00075 at 15.404 kb on - strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.411 kb on + strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.412 kb on - strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.414 kb on + strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.415 kb on - strand, within AO356_00075 at 15.480 kb on + strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.481 kb on - strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.508 kb on + strand, within AO356_00075 at 15.509 kb on - strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.562 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.748 kb on + strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.749 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.766 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.775 kb on - strand, within AO356_00075 at 15.795 kb on - strand, within AO356_00075 at 15.935 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 15.983 kb on - strand at 16.044 kb on - strand at 16.107 kb on - strand, within AO356_00080 at 16.116 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.119 kb on + strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.120 kb on - strand, within AO356_00080 at 16.188 kb on + strand, within AO356_00080 at 16.373 kb on - strand at 16.378 kb on + strand at 16.409 kb on + strand at 16.446 kb on - strand, within AO356_00085 at 16.523 kb on + strand, within AO356_00085 at 16.524 kb on - strand, within AO356_00085 at 16.546 kb on + strand, within AO356_00085 at 16.547 kb on - strand, within AO356_00085 at 16.549 kb on + strand, within AO356_00085 at 16.550 kb on - strand, within AO356_00085 at 16.890 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.894 kb on + strand, within AO356_00085 at 16.895 kb on - strand, within AO356_00085 at 17.117 kb on - strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.236 kb on + strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085 at 17.237 kb on - strand, within AO356_00085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 15,090 + AO356_00070 0.88 -0.2 15,214 - AO356_00075 0.11 -0.1 15,214 - AO356_00075 0.11 +1.7 15,260 + AO356_00075 0.16 +0.2 15,260 + AO356_00075 0.16 -0.4 15,260 + AO356_00075 0.16 +0.4 15,261 - AO356_00075 0.16 -0.3 15,263 + AO356_00075 0.17 -1.9 15,263 + AO356_00075 0.17 -0.5 15,264 - AO356_00075 0.17 +1.4 15,264 - AO356_00075 0.17 +0.1 15,337 - AO356_00075 0.26 +1.2 15,337 - AO356_00075 0.26 -0.2 15,337 - AO356_00075 0.26 -0.1 15,404 - AO356_00075 0.33 -0.6 15,411 + AO356_00075 0.34 -0.1 15,411 + AO356_00075 0.34 -0.8 15,411 + AO356_00075 0.34 -0.2 15,412 - AO356_00075 0.34 -1.0 15,412 - AO356_00075 0.34 +0.3 15,414 + AO356_00075 0.35 +1.2 15,414 + AO356_00075 0.35 +0.2 15,415 - AO356_00075 0.35 +0.5 15,415 - AO356_00075 0.35 +0.2 15,415 - AO356_00075 0.35 -0.2 15,480 + AO356_00075 0.42 +0.6 15,481 - AO356_00075 0.43 -0.1 15,481 - AO356_00075 0.43 +0.3 15,481 - AO356_00075 0.43 +0.6 15,481 - AO356_00075 0.43 -0.2 15,481 - AO356_00075 0.43 -0.4 15,508 + AO356_00075 0.46 +1.0 15,508 + AO356_00075 0.46 +1.6 15,509 - AO356_00075 0.46 +0.4 15,562 + AO356_00075 0.52 -0.2 15,562 + AO356_00075 0.52 +0.1 15,748 + AO356_00075 0.74 +0.2 15,748 + AO356_00075 0.74 +0.1 15,749 - AO356_00075 0.74 -2.5 15,749 - AO356_00075 0.74 +0.7 15,749 - AO356_00075 0.74 -0.4 15,766 - AO356_00075 0.76 +0.7 15,766 - AO356_00075 0.76 -1.0 15,775 - AO356_00075 0.77 -0.8 15,775 - AO356_00075 0.77 -1.5 15,775 - AO356_00075 0.77 +0.9 15,775 - AO356_00075 0.77 +0.5 15,795 - AO356_00075 0.80 +1.5 15,935 - -0.0 15,983 - -0.2 15,983 - +0.3 15,983 - -0.7 16,044 - -0.9 16,107 - AO356_00080 0.27 +0.6 16,116 + AO356_00080 0.31 +0.7 16,119 + AO356_00080 0.33 +0.3 16,119 + AO356_00080 0.33 -0.6 16,119 + AO356_00080 0.33 -1.3 16,120 - AO356_00080 0.33 -0.4 16,120 - AO356_00080 0.33 -1.1 16,120 - AO356_00080 0.33 -0.9 16,120 - AO356_00080 0.33 -0.1 16,120 - AO356_00080 0.33 +0.3 16,188 + AO356_00080 0.66 -0.2 16,373 - +0.8 16,378 + +0.2 16,409 + +1.2 16,446 - AO356_00085 0.11 -0.0 16,523 + AO356_00085 0.16 -1.3 16,524 - AO356_00085 0.16 -1.2 16,546 + AO356_00085 0.17 +0.3 16,547 - AO356_00085 0.17 +0.5 16,549 + AO356_00085 0.17 -1.5 16,550 - AO356_00085 0.18 -0.3 16,890 + AO356_00085 0.39 +0.3 16,894 + AO356_00085 0.39 +0.0 16,894 + AO356_00085 0.39 +0.0 16,895 - AO356_00085 0.40 +1.1 17,117 - AO356_00085 0.54 +0.8 17,236 + AO356_00085 0.61 +0.3 17,236 + AO356_00085 0.61 +1.1 17,237 - AO356_00085 0.61 +0.3 17,237 - AO356_00085 0.61 -0.4
Or see this region's nucleotide sequence