Experiment: Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004117 and ABIE53_004118 are separated by 12 nucleotides ABIE53_004118 and ABIE53_004119 are separated by 8 nucleotides ABIE53_004119 and ABIE53_004120 are separated by 73 nucleotides ABIE53_004120 and ABIE53_004121 are separated by 111 nucleotides
ABIE53_004117: ABIE53_004117 - 4-aminobutyrate aminotransferase, at 289,149 to 290,438
_004117
ABIE53_004118: ABIE53_004118 - hypothetical protein, at 290,451 to 290,573
_004118
ABIE53_004119: ABIE53_004119 - succinate-semialdehyde dehydrogenase/glutarate-semialdehyde dehydrogenase, at 290,582 to 291,910
_004119
ABIE53_004120: ABIE53_004120 - hypothetical protein, at 291,984 to 292,307
_004120
ABIE53_004121: ABIE53_004121 - AraC family carnitine catabolism transcriptional activator, at 292,419 to 293,462
_004121
Position (kb) 290
291
292 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 289.615 kb on - strand, within ABIE53_004117 at 289.615 kb on - strand, within ABIE53_004117 at 289.615 kb on - strand, within ABIE53_004117 at 289.794 kb on + strand, within ABIE53_004117 at 289.920 kb on + strand, within ABIE53_004117 at 289.920 kb on + strand, within ABIE53_004117 at 289.920 kb on + strand, within ABIE53_004117 at 289.921 kb on - strand, within ABIE53_004117 at 289.921 kb on - strand, within ABIE53_004117 at 289.921 kb on - strand, within ABIE53_004117 at 289.921 kb on - strand, within ABIE53_004117 at 290.043 kb on + strand, within ABIE53_004117 at 290.043 kb on + strand, within ABIE53_004117 at 290.043 kb on + strand, within ABIE53_004117 at 290.043 kb on + strand, within ABIE53_004117 at 290.043 kb on + strand, within ABIE53_004117 at 290.043 kb on + strand, within ABIE53_004117 at 290.044 kb on - strand, within ABIE53_004117 at 290.326 kb on - strand at 290.326 kb on - strand at 290.499 kb on + strand, within ABIE53_004118 at 290.499 kb on + strand, within ABIE53_004118 at 290.499 kb on + strand, within ABIE53_004118 at 290.500 kb on - strand, within ABIE53_004118 at 290.789 kb on + strand, within ABIE53_004119 at 290.947 kb on + strand, within ABIE53_004119 at 290.948 kb on - strand, within ABIE53_004119 at 290.948 kb on - strand, within ABIE53_004119 at 291.213 kb on + strand, within ABIE53_004119 at 291.214 kb on - strand, within ABIE53_004119 at 291.214 kb on - strand, within ABIE53_004119 at 291.214 kb on - strand, within ABIE53_004119 at 291.302 kb on + strand, within ABIE53_004119 at 291.344 kb on + strand, within ABIE53_004119 at 291.344 kb on + strand, within ABIE53_004119 at 291.344 kb on + strand, within ABIE53_004119 at 291.345 kb on - strand, within ABIE53_004119 at 291.345 kb on - strand, within ABIE53_004119 at 291.345 kb on - strand, within ABIE53_004119 at 291.345 kb on - strand, within ABIE53_004119 at 291.345 kb on - strand, within ABIE53_004119 at 291.345 kb on - strand, within ABIE53_004119 at 291.362 kb on + strand, within ABIE53_004119 at 291.362 kb on + strand, within ABIE53_004119 at 291.363 kb on - strand, within ABIE53_004119 at 291.363 kb on - strand, within ABIE53_004119 at 291.487 kb on + strand, within ABIE53_004119 at 291.487 kb on + strand, within ABIE53_004119 at 291.603 kb on + strand, within ABIE53_004119 at 291.604 kb on - strand, within ABIE53_004119 at 291.604 kb on - strand, within ABIE53_004119 at 291.604 kb on - strand, within ABIE53_004119 at 291.604 kb on - strand, within ABIE53_004119 at 291.667 kb on - strand, within ABIE53_004119 at 291.708 kb on - strand, within ABIE53_004119 at 291.713 kb on + strand, within ABIE53_004119 at 291.714 kb on - strand, within ABIE53_004119 at 291.736 kb on - strand, within ABIE53_004119 at 291.736 kb on - strand, within ABIE53_004119 at 291.736 kb on - strand, within ABIE53_004119 at 291.736 kb on - strand, within ABIE53_004119 at 291.771 kb on + strand, within ABIE53_004119 at 291.771 kb on + strand, within ABIE53_004119 at 291.772 kb on - strand, within ABIE53_004119 at 291.772 kb on - strand, within ABIE53_004119 at 291.772 kb on - strand, within ABIE53_004119 at 291.772 kb on - strand, within ABIE53_004119 at 291.857 kb on + strand at 291.858 kb on - strand at 291.872 kb on + strand at 291.872 kb on + strand at 291.872 kb on + strand at 291.872 kb on + strand at 291.872 kb on + strand at 291.872 kb on + strand at 291.873 kb on - strand at 291.873 kb on - strand at 291.873 kb on - strand at 291.873 kb on - strand at 291.873 kb on - strand at 291.873 kb on - strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.887 kb on + strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.888 kb on - strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.889 kb on + strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.890 kb on - strand at 291.946 kb on + strand at 291.997 kb on + strand at 291.997 kb on + strand at 291.998 kb on - strand at 291.998 kb on - strand at 291.998 kb on - strand at 292.012 kb on + strand at 292.012 kb on + strand at 292.013 kb on - strand at 292.076 kb on - strand, within ABIE53_004120 at 292.076 kb on - strand, within ABIE53_004120 at 292.076 kb on - strand, within ABIE53_004120 at 292.150 kb on + strand, within ABIE53_004120 at 292.150 kb on + strand, within ABIE53_004120 at 292.150 kb on + strand, within ABIE53_004120 at 292.174 kb on + strand, within ABIE53_004120 at 292.174 kb on + strand, within ABIE53_004120 at 292.175 kb on - strand, within ABIE53_004120 at 292.268 kb on + strand, within ABIE53_004120 at 292.268 kb on + strand, within ABIE53_004120 at 292.315 kb on + strand at 292.315 kb on + strand at 292.315 kb on + strand at 292.316 kb on - strand at 292.378 kb on + strand at 292.378 kb on + strand at 292.378 kb on + strand at 292.378 kb on + strand at 292.378 kb on + strand at 292.378 kb on + strand at 292.378 kb on + strand at 292.379 kb on - strand at 292.379 kb on - strand at 292.379 kb on - strand at 292.379 kb on - strand at 292.395 kb on - strand at 292.395 kb on - strand at 292.440 kb on + strand at 292.440 kb on + strand at 292.441 kb on - strand at 292.460 kb on + strand at 292.465 kb on - strand at 292.537 kb on + strand, within ABIE53_004121 at 292.537 kb on + strand, within ABIE53_004121 at 292.537 kb on + strand, within ABIE53_004121 at 292.537 kb on + strand, within ABIE53_004121 at 292.538 kb on - strand, within ABIE53_004121 at 292.538 kb on - strand, within ABIE53_004121 at 292.538 kb on - strand, within ABIE53_004121 at 292.538 kb on - strand, within ABIE53_004121 at 292.538 kb on - strand, within ABIE53_004121 at 292.538 kb on - strand, within ABIE53_004121 at 292.651 kb on + strand, within ABIE53_004121 at 292.651 kb on + strand, within ABIE53_004121 at 292.651 kb on + strand, within ABIE53_004121 at 292.651 kb on + strand, within ABIE53_004121 at 292.652 kb on - strand, within ABIE53_004121 at 292.652 kb on - strand, within ABIE53_004121 at 292.652 kb on - strand, within ABIE53_004121 at 292.652 kb on - strand, within ABIE53_004121 at 292.652 kb on - strand, within ABIE53_004121 at 292.652 kb on - strand, within ABIE53_004121 at 292.813 kb on + strand, within ABIE53_004121
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 289,615 - ABIE53_004117 0.36 -1.9 289,615 - ABIE53_004117 0.36 -2.6 289,615 - ABIE53_004117 0.36 +1.6 289,794 + ABIE53_004117 0.50 -1.4 289,920 + ABIE53_004117 0.60 +0.3 289,920 + ABIE53_004117 0.60 -0.0 289,920 + ABIE53_004117 0.60 +0.6 289,921 - ABIE53_004117 0.60 +0.6 289,921 - ABIE53_004117 0.60 -2.5 289,921 - ABIE53_004117 0.60 -1.7 289,921 - ABIE53_004117 0.60 -1.2 290,043 + ABIE53_004117 0.69 -1.7 290,043 + ABIE53_004117 0.69 -1.9 290,043 + ABIE53_004117 0.69 -1.9 290,043 + ABIE53_004117 0.69 -0.7 290,043 + ABIE53_004117 0.69 -1.9 290,043 + ABIE53_004117 0.69 -1.6 290,044 - ABIE53_004117 0.69 -0.1 290,326 - -1.2 290,326 - -0.4 290,499 + ABIE53_004118 0.39 +3.9 290,499 + ABIE53_004118 0.39 -1.6 290,499 + ABIE53_004118 0.39 +0.8 290,500 - ABIE53_004118 0.40 +0.6 290,789 + ABIE53_004119 0.16 +0.3 290,947 + ABIE53_004119 0.27 -0.0 290,948 - ABIE53_004119 0.28 +0.7 290,948 - ABIE53_004119 0.28 -0.3 291,213 + ABIE53_004119 0.47 +1.1 291,214 - ABIE53_004119 0.48 +0.6 291,214 - ABIE53_004119 0.48 -2.5 291,214 - ABIE53_004119 0.48 -0.1 291,302 + ABIE53_004119 0.54 +1.2 291,344 + ABIE53_004119 0.57 +0.3 291,344 + ABIE53_004119 0.57 +1.6 291,344 + ABIE53_004119 0.57 +1.8 291,345 - ABIE53_004119 0.57 -0.7 291,345 - ABIE53_004119 0.57 +0.1 291,345 - ABIE53_004119 0.57 +1.5 291,345 - ABIE53_004119 0.57 -1.2 291,345 - ABIE53_004119 0.57 -0.5 291,345 - ABIE53_004119 0.57 -1.4 291,362 + ABIE53_004119 0.59 -0.0 291,362 + ABIE53_004119 0.59 -2.8 291,363 - ABIE53_004119 0.59 +1.8 291,363 - ABIE53_004119 0.59 -1.7 291,487 + ABIE53_004119 0.68 -1.4 291,487 + ABIE53_004119 0.68 -1.6 291,603 + ABIE53_004119 0.77 +0.3 291,604 - ABIE53_004119 0.77 +1.5 291,604 - ABIE53_004119 0.77 -0.5 291,604 - ABIE53_004119 0.77 -0.8 291,604 - ABIE53_004119 0.77 +1.1 291,667 - ABIE53_004119 0.82 +1.7 291,708 - ABIE53_004119 0.85 -0.3 291,713 + ABIE53_004119 0.85 +4.2 291,714 - ABIE53_004119 0.85 -0.7 291,736 - ABIE53_004119 0.87 +0.6 291,736 - ABIE53_004119 0.87 +1.6 291,736 - ABIE53_004119 0.87 -2.3 291,736 - ABIE53_004119 0.87 +0.9 291,771 + ABIE53_004119 0.89 -0.7 291,771 + ABIE53_004119 0.89 +1.3 291,772 - ABIE53_004119 0.90 +1.6 291,772 - ABIE53_004119 0.90 +0.5 291,772 - ABIE53_004119 0.90 -3.0 291,772 - ABIE53_004119 0.90 -1.9 291,857 + -0.4 291,858 - -1.4 291,872 + -0.5 291,872 + +0.6 291,872 + +0.0 291,872 + -0.4 291,872 + -0.1 291,872 + +1.6 291,873 - +0.7 291,873 - +4.6 291,873 - +1.4 291,873 - +2.0 291,873 - -0.0 291,873 - +2.6 291,887 + -2.0 291,887 + -0.1 291,887 + -0.4 291,887 + -0.3 291,887 + +0.9 291,887 + +0.1 291,887 + -1.0 291,887 + +2.9 291,887 + -1.7 291,887 + +0.6 291,887 + +1.6 291,887 + +2.9 291,887 + -0.4 291,887 + +0.3 291,887 + +0.2 291,888 - +1.6 291,888 - -1.2 291,888 - +2.2 291,888 - +0.4 291,888 - -0.5 291,888 - -1.4 291,888 - -0.0 291,888 - +3.2 291,888 - +1.6 291,888 - -0.7 291,888 - -1.0 291,888 - +0.6 291,888 - -0.7 291,888 - +1.3 291,888 - +7.3 291,888 - -1.0 291,888 - +2.0 291,889 + -1.7 291,889 + +0.5 291,889 + -0.7 291,889 + -0.4 291,889 + -0.5 291,889 + +0.1 291,889 + -0.2 291,889 + +1.6 291,889 + -0.0 291,889 + -0.6 291,889 + +0.6 291,889 + +0.5 291,889 + +0.2 291,889 + -0.6 291,889 + -0.2 291,889 + -0.2 291,889 + -0.9 291,889 + +0.6 291,890 - -0.4 291,890 - +1.0 291,890 - -1.2 291,890 - +0.6 291,890 - -1.4 291,890 - +1.6 291,890 - -1.3 291,890 - -0.0 291,890 - -0.3 291,890 - -0.4 291,890 - +3.8 291,890 - -0.7 291,890 - +0.3 291,890 - -0.6 291,890 - -2.4 291,890 - +0.6 291,890 - +4.0 291,890 - -1.3 291,946 + -0.6 291,997 + +0.4 291,997 + +2.5 291,998 - -0.4 291,998 - +0.6 291,998 - -1.0 292,012 + +2.3 292,012 + +2.3 292,013 - -2.3 292,076 - ABIE53_004120 0.28 +0.4 292,076 - ABIE53_004120 0.28 -1.4 292,076 - ABIE53_004120 0.28 +1.5 292,150 + ABIE53_004120 0.51 -2.0 292,150 + ABIE53_004120 0.51 +0.3 292,150 + ABIE53_004120 0.51 -0.0 292,174 + ABIE53_004120 0.59 +2.8 292,174 + ABIE53_004120 0.59 -3.3 292,175 - ABIE53_004120 0.59 -0.7 292,268 + ABIE53_004120 0.88 +0.8 292,268 + ABIE53_004120 0.88 -0.0 292,315 + +0.2 292,315 + -0.0 292,315 + +1.3 292,316 - -2.0 292,378 + -1.7 292,378 + -0.0 292,378 + +0.4 292,378 + -0.6 292,378 + +1.6 292,378 + -0.3 292,378 + -0.9 292,379 - -0.3 292,379 - +1.6 292,379 - +1.6 292,379 - +1.6 292,395 - +2.1 292,395 - +1.8 292,440 + +0.6 292,440 + -0.1 292,441 - -1.9 292,460 + -0.1 292,465 - -0.7 292,537 + ABIE53_004121 0.11 -0.4 292,537 + ABIE53_004121 0.11 -0.2 292,537 + ABIE53_004121 0.11 +0.6 292,537 + ABIE53_004121 0.11 -0.0 292,538 - ABIE53_004121 0.11 -1.9 292,538 - ABIE53_004121 0.11 +0.9 292,538 - ABIE53_004121 0.11 +1.6 292,538 - ABIE53_004121 0.11 -1.0 292,538 - ABIE53_004121 0.11 +1.9 292,538 - ABIE53_004121 0.11 +1.6 292,651 + ABIE53_004121 0.22 -0.1 292,651 + ABIE53_004121 0.22 -1.9 292,651 + ABIE53_004121 0.22 -0.9 292,651 + ABIE53_004121 0.22 +1.6 292,652 - ABIE53_004121 0.22 -0.9 292,652 - ABIE53_004121 0.22 +2.0 292,652 - ABIE53_004121 0.22 -2.3 292,652 - ABIE53_004121 0.22 -1.6 292,652 - ABIE53_004121 0.22 +0.2 292,652 - ABIE53_004121 0.22 +1.8 292,813 + ABIE53_004121 0.38 -2.7
Or see this region's nucleotide sequence