Experiment: Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000451 and ABIE53_000452 are separated by 704 nucleotides ABIE53_000452 and ABIE53_000453 are separated by 156 nucleotides ABIE53_000453 and ABIE53_000454 are separated by 290 nucleotides
ABIE53_000451: ABIE53_000451 - ferredoxin--NADP+ reductase, at 486,553 to 487,323
_000451
ABIE53_000452: ABIE53_000452 - endonuclease/exonuclease/phosphatase family metal-dependent hydrolase, at 488,028 to 488,825
_000452
ABIE53_000453: ABIE53_000453 - hypothetical protein, at 488,982 to 489,521
_000453
ABIE53_000454: ABIE53_000454 - ATP-dependent Lon protease, at 489,812 to 490,789
_000454
Position (kb) 488
489 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 487.336 kb on - strand at 487.336 kb on - strand at 487.430 kb on - strand at 487.616 kb on + strand at 487.616 kb on + strand at 487.616 kb on + strand at 487.731 kb on - strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.764 kb on + strand at 487.765 kb on - strand at 487.765 kb on - strand at 487.765 kb on - strand at 487.765 kb on - strand at 487.765 kb on - strand at 487.791 kb on + strand at 487.791 kb on + strand at 487.791 kb on + strand at 487.791 kb on + strand at 487.791 kb on + strand at 487.792 kb on - strand at 487.792 kb on - strand at 487.792 kb on - strand at 487.792 kb on - strand at 487.792 kb on - strand at 487.804 kb on + strand at 487.804 kb on + strand at 487.804 kb on + strand at 487.804 kb on + strand at 487.805 kb on - strand at 487.913 kb on + strand at 487.913 kb on + strand at 487.913 kb on + strand at 487.913 kb on + strand at 487.914 kb on + strand at 487.914 kb on - strand at 487.914 kb on - strand at 487.941 kb on + strand at 487.941 kb on + strand at 487.941 kb on + strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.942 kb on - strand at 487.942 kb on - strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.051 kb on + strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.052 kb on - strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.053 kb on + strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.054 kb on - strand at 488.055 kb on - strand at 488.444 kb on + strand, within ABIE53_000452 at 488.444 kb on + strand, within ABIE53_000452 at 488.444 kb on + strand, within ABIE53_000452 at 488.444 kb on + strand, within ABIE53_000452 at 488.445 kb on - strand, within ABIE53_000452 at 488.445 kb on - strand, within ABIE53_000452 at 488.632 kb on - strand, within ABIE53_000452 at 488.674 kb on + strand, within ABIE53_000452 at 488.674 kb on + strand, within ABIE53_000452 at 488.674 kb on + strand, within ABIE53_000452 at 488.675 kb on - strand, within ABIE53_000452 at 488.675 kb on - strand, within ABIE53_000452 at 489.248 kb on + strand, within ABIE53_000453 at 489.507 kb on - strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.521 kb on + strand at 489.522 kb on - strand at 489.522 kb on - strand at 489.522 kb on - strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.572 kb on + strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.573 kb on - strand at 489.606 kb on + strand at 489.606 kb on + strand at 489.607 kb on - strand at 489.633 kb on + strand at 489.634 kb on - strand at 489.687 kb on + strand at 489.688 kb on - strand at 489.688 kb on - strand at 489.698 kb on + strand at 489.698 kb on + strand at 489.747 kb on + strand at 489.748 kb on - strand at 489.784 kb on + strand at 489.785 kb on - strand at 489.785 kb on - strand at 489.785 kb on - strand at 489.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Arabidopsis_thaliana; PlantTreatment=None; Sample=soil; GrowthSubstrate=quartz_sand; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 487,336 - +0.4 487,336 - +2.9 487,430 - -2.0 487,616 + -1.3 487,616 + +1.6 487,616 + +1.6 487,731 - +0.7 487,764 + +0.2 487,764 + -2.1 487,764 + +0.5 487,764 + +0.8 487,764 + -0.1 487,764 + +0.1 487,764 + +2.6 487,764 + +1.6 487,765 - +0.6 487,765 - +1.5 487,765 - -1.0 487,765 - +4.4 487,765 - -2.2 487,791 + +0.9 487,791 + -0.4 487,791 + -0.6 487,791 + +0.5 487,791 + +0.0 487,792 - -0.5 487,792 - -1.8 487,792 - -3.3 487,792 - +0.0 487,792 - +0.5 487,804 + -0.1 487,804 + -0.7 487,804 + +1.4 487,804 + -0.8 487,805 - -3.1 487,913 + +1.6 487,913 + +1.3 487,913 + -1.2 487,913 + +1.0 487,914 + -0.5 487,914 - -1.4 487,914 - +0.6 487,941 + +1.2 487,941 + -0.4 487,941 + -1.2 487,942 - +0.6 487,942 - +1.2 487,942 - -1.2 487,942 - -0.2 487,942 - -2.5 487,942 - +0.0 487,942 - -0.4 487,942 - -3.6 488,051 + -2.6 488,051 + -0.4 488,051 + +1.6 488,051 + +0.2 488,051 + +0.7 488,052 - -2.5 488,052 - +1.5 488,052 - -0.9 488,052 - -1.0 488,052 - +1.3 488,052 - +1.3 488,052 - +1.4 488,052 - +0.0 488,053 + -1.0 488,053 + -0.6 488,053 + -1.2 488,053 + +0.6 488,053 + +0.5 488,053 + -1.5 488,053 + +1.1 488,053 + -1.2 488,053 + +0.2 488,053 + +0.0 488,053 + -1.5 488,053 + +0.0 488,054 - +0.6 488,054 - -1.3 488,054 - +0.3 488,054 - +0.6 488,054 - +0.2 488,054 - -0.8 488,054 - +0.6 488,054 - -0.6 488,054 - -1.0 488,054 - -0.6 488,054 - -2.1 488,054 - -2.3 488,054 - -2.3 488,054 - +0.0 488,054 - -0.5 488,054 - +0.4 488,055 - +0.9 488,444 + ABIE53_000452 0.52 +0.2 488,444 + ABIE53_000452 0.52 +2.2 488,444 + ABIE53_000452 0.52 +1.0 488,444 + ABIE53_000452 0.52 -1.4 488,445 - ABIE53_000452 0.52 -1.8 488,445 - ABIE53_000452 0.52 +0.2 488,632 - ABIE53_000452 0.76 +0.6 488,674 + ABIE53_000452 0.81 -1.4 488,674 + ABIE53_000452 0.81 +1.2 488,674 + ABIE53_000452 0.81 -1.7 488,675 - ABIE53_000452 0.81 +1.1 488,675 - ABIE53_000452 0.81 +0.0 489,248 + ABIE53_000453 0.49 -3.0 489,507 - -2.1 489,521 + +0.6 489,521 + -1.0 489,521 + -1.2 489,521 + -0.2 489,521 + +0.3 489,521 + -0.9 489,521 + -0.6 489,521 + -0.8 489,522 - -1.1 489,522 - -1.2 489,522 - -0.4 489,572 + -1.0 489,572 + -0.7 489,572 + +0.1 489,572 + -0.3 489,572 + -1.3 489,572 + -2.5 489,572 + +1.4 489,573 - -0.7 489,573 - +1.6 489,573 - -0.7 489,573 - -0.5 489,573 - -2.8 489,606 + +1.0 489,606 + +0.4 489,607 - -0.3 489,633 + +1.6 489,634 - -2.3 489,687 + +3.2 489,688 - +0.0 489,688 - -1.8 489,698 + -0.7 489,698 + -1.6 489,747 + -1.2 489,748 - +1.6 489,784 + -0.4 489,785 - -2.1 489,785 - -0.5 489,785 - +0.3 489,785 - -1.7
Or see this region's nucleotide sequence