Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2149 and Shew_2150 are separated by 136 nucleotides Shew_2150 and Shew_2151 are separated by 116 nucleotides Shew_2151 and Shew_2152 are separated by 354 nucleotides
Shew_2149: Shew_2149 - ABC transporter (RefSeq), at 2,495,069 to 2,495,929
_2149
Shew_2150: Shew_2150 - integral membrane protein TerC (RefSeq), at 2,496,066 to 2,496,293
_2150
Shew_2151: Shew_2151 - hypothetical protein (RefSeq), at 2,496,410 to 2,496,787
_2151
Shew_2152: Shew_2152 - hypothetical protein (RefSeq), at 2,497,142 to 2,497,486
_2152
Position (kb) 2496
2497 Strain fitness (log2 ratio) -1
0
1 at 2495.186 kb on - strand, within Shew_2149 at 2495.668 kb on + strand, within Shew_2149 at 2495.776 kb on - strand, within Shew_2149 at 2495.881 kb on - strand at 2496.151 kb on + strand, within Shew_2150 at 2496.197 kb on - strand, within Shew_2150 at 2496.267 kb on - strand, within Shew_2150 at 2496.440 kb on + strand at 2496.440 kb on + strand at 2496.495 kb on - strand, within Shew_2151
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 2,495,186 - Shew_2149 0.14 -0.1 2,495,668 + Shew_2149 0.70 +0.1 2,495,776 - Shew_2149 0.82 +0.1 2,495,881 - +0.1 2,496,151 + Shew_2150 0.37 -0.1 2,496,197 - Shew_2150 0.57 +0.3 2,496,267 - Shew_2150 0.88 +0.2 2,496,440 + +0.6 2,496,440 + -0.2 2,496,495 - Shew_2151 0.22 -0.0
Or see this region's nucleotide sequence