Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0456 and Shew_0457 are separated by 135 nucleotides Shew_0457 and Shew_0458 are separated by 365 nucleotides
Shew_0456: Shew_0456 - hypothetical protein (RefSeq), at 506,342 to 507,226
_0456
Shew_0457: Shew_0457 - ATP-dependent helicase HepA (RefSeq), at 507,362 to 510,268
_0457
Shew_0458: Shew_0458 - PhoH family protein (RefSeq), at 510,634 to 512,028
_0458
Position (kb) 507
508
509
510
511 Strain fitness (log2 ratio) -2
-1
0
1 at 506.383 kb on - strand at 506.406 kb on + strand at 506.542 kb on - strand, within Shew_0456 at 506.561 kb on - strand, within Shew_0456 at 506.617 kb on - strand, within Shew_0456 at 506.621 kb on + strand, within Shew_0456 at 506.634 kb on - strand, within Shew_0456 at 506.746 kb on + strand, within Shew_0456 at 506.861 kb on + strand, within Shew_0456 at 506.919 kb on - strand, within Shew_0456 at 506.933 kb on + strand, within Shew_0456 at 507.040 kb on + strand, within Shew_0456 at 507.079 kb on + strand, within Shew_0456 at 507.137 kb on - strand, within Shew_0456 at 507.142 kb on - strand at 507.192 kb on + strand at 507.277 kb on - strand at 507.517 kb on + strand at 507.633 kb on + strand at 507.910 kb on - strand, within Shew_0457 at 508.009 kb on + strand, within Shew_0457 at 508.059 kb on - strand, within Shew_0457 at 508.106 kb on + strand, within Shew_0457 at 508.207 kb on + strand, within Shew_0457 at 508.460 kb on - strand, within Shew_0457 at 508.929 kb on + strand, within Shew_0457 at 508.929 kb on + strand, within Shew_0457 at 508.937 kb on - strand, within Shew_0457 at 508.937 kb on - strand, within Shew_0457 at 508.950 kb on + strand, within Shew_0457 at 509.203 kb on - strand, within Shew_0457 at 509.529 kb on + strand, within Shew_0457 at 509.721 kb on + strand, within Shew_0457 at 509.768 kb on + strand, within Shew_0457 at 509.787 kb on - strand, within Shew_0457 at 509.828 kb on + strand, within Shew_0457 at 509.842 kb on + strand, within Shew_0457 at 509.985 kb on - strand at 510.243 kb on - strand at 510.623 kb on - strand at 510.740 kb on - strand at 510.740 kb on - strand at 510.848 kb on - strand, within Shew_0458 at 510.987 kb on + strand, within Shew_0458 at 510.995 kb on - strand, within Shew_0458 at 511.065 kb on + strand, within Shew_0458
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 506,383 - -0.1 506,406 + -0.1 506,542 - Shew_0456 0.23 -0.3 506,561 - Shew_0456 0.25 +0.1 506,617 - Shew_0456 0.31 +0.2 506,621 + Shew_0456 0.32 +0.0 506,634 - Shew_0456 0.33 -0.4 506,746 + Shew_0456 0.46 +0.1 506,861 + Shew_0456 0.59 +1.2 506,919 - Shew_0456 0.65 -0.1 506,933 + Shew_0456 0.67 +0.2 507,040 + Shew_0456 0.79 +0.1 507,079 + Shew_0456 0.83 +0.2 507,137 - Shew_0456 0.90 -0.2 507,142 - +0.1 507,192 + -0.2 507,277 - +0.1 507,517 + -0.7 507,633 + -0.1 507,910 - Shew_0457 0.19 -0.7 508,009 + Shew_0457 0.22 -0.7 508,059 - Shew_0457 0.24 -0.8 508,106 + Shew_0457 0.26 -0.5 508,207 + Shew_0457 0.29 -0.9 508,460 - Shew_0457 0.38 -0.4 508,929 + Shew_0457 0.54 -1.0 508,929 + Shew_0457 0.54 -0.5 508,937 - Shew_0457 0.54 +0.0 508,937 - Shew_0457 0.54 -2.0 508,950 + Shew_0457 0.55 -0.8 509,203 - Shew_0457 0.63 -0.5 509,529 + Shew_0457 0.75 -0.8 509,721 + Shew_0457 0.81 -0.8 509,768 + Shew_0457 0.83 -0.5 509,787 - Shew_0457 0.83 -0.4 509,828 + Shew_0457 0.85 -0.4 509,842 + Shew_0457 0.85 -0.8 509,985 - -0.6 510,243 - -0.9 510,623 - +0.8 510,740 - -0.2 510,740 - +0.3 510,848 - Shew_0458 0.15 -0.1 510,987 + Shew_0458 0.25 -0.1 510,995 - Shew_0458 0.26 -0.3 511,065 + Shew_0458 0.31 -0.1
Or see this region's nucleotide sequence