Experiment: Adenosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2388 and Dshi_2389 are separated by 12 nucleotides Dshi_2389 and Dshi_2390 are separated by 92 nucleotides Dshi_2390 and Dshi_2391 are separated by 129 nucleotides Dshi_2391 and Dshi_2392 are separated by 75 nucleotides
Dshi_2388: Dshi_2388 - glycosyl transferase family 2 (RefSeq), at 2,522,050 to 2,523,957
_2388
Dshi_2389: Dshi_2389 - transcriptional regulator, GntR family (RefSeq), at 2,523,970 to 2,524,611
_2389
Dshi_2390: Dshi_2390 - pyrimidine 5'-nucleotidase (RefSeq), at 2,524,704 to 2,525,351
_2390
Dshi_2391: Dshi_2391 - hypothetical protein (RefSeq), at 2,525,481 to 2,525,726
_2391
Dshi_2392: Dshi_2392 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 2,525,802 to 2,527,001
_2392
Position (kb)
2524
2525
2526 Strain fitness (log2 ratio)
-1
0
1 at 2523.883 kb on + strand at 2524.167 kb on + strand, within Dshi_2389 at 2524.264 kb on - strand, within Dshi_2389 at 2524.264 kb on - strand, within Dshi_2389 at 2524.284 kb on - strand, within Dshi_2389 at 2524.603 kb on - strand at 2524.735 kb on - strand at 2524.872 kb on + strand, within Dshi_2390 at 2525.003 kb on + strand, within Dshi_2390 at 2525.003 kb on + strand, within Dshi_2390 at 2525.149 kb on - strand, within Dshi_2390 at 2525.207 kb on + strand, within Dshi_2390 at 2525.428 kb on + strand at 2525.778 kb on - strand at 2525.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenosine (N) remove 2,523,883 + +0.5 2,524,167 + Dshi_2389 0.31 +0.6 2,524,264 - Dshi_2389 0.46 -0.5 2,524,264 - Dshi_2389 0.46 -0.0 2,524,284 - Dshi_2389 0.49 +0.4 2,524,603 - +0.8 2,524,735 - +0.7 2,524,872 + Dshi_2390 0.26 +0.5 2,525,003 + Dshi_2390 0.46 -0.0 2,525,003 + Dshi_2390 0.46 -0.8 2,525,149 - Dshi_2390 0.69 +0.6 2,525,207 + Dshi_2390 0.78 -1.1 2,525,428 + +0.7 2,525,778 - -0.4 2,525,778 - +0.1
Or see this region's nucleotide sequence