Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2390

Experiment: Adenosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2388 and Dshi_2389 are separated by 12 nucleotidesDshi_2389 and Dshi_2390 are separated by 92 nucleotidesDshi_2390 and Dshi_2391 are separated by 129 nucleotidesDshi_2391 and Dshi_2392 are separated by 75 nucleotides Dshi_2388: Dshi_2388 - glycosyl transferase family 2 (RefSeq), at 2,522,050 to 2,523,957 _2388 Dshi_2389: Dshi_2389 - transcriptional regulator, GntR family (RefSeq), at 2,523,970 to 2,524,611 _2389 Dshi_2390: Dshi_2390 - pyrimidine 5'-nucleotidase (RefSeq), at 2,524,704 to 2,525,351 _2390 Dshi_2391: Dshi_2391 - hypothetical protein (RefSeq), at 2,525,481 to 2,525,726 _2391 Dshi_2392: Dshi_2392 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 2,525,802 to 2,527,001 _2392 Position (kb) 2524 2525 2526Strain fitness (log2 ratio) -1 0 1at 2523.883 kb on + strandat 2524.167 kb on + strand, within Dshi_2389at 2524.264 kb on - strand, within Dshi_2389at 2524.264 kb on - strand, within Dshi_2389at 2524.284 kb on - strand, within Dshi_2389at 2524.603 kb on - strandat 2524.735 kb on - strandat 2524.872 kb on + strand, within Dshi_2390at 2525.003 kb on + strand, within Dshi_2390at 2525.003 kb on + strand, within Dshi_2390at 2525.149 kb on - strand, within Dshi_2390at 2525.207 kb on + strand, within Dshi_2390at 2525.428 kb on + strandat 2525.778 kb on - strandat 2525.778 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
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2,523,883 + +0.5
2,524,167 + Dshi_2389 0.31 +0.6
2,524,264 - Dshi_2389 0.46 -0.5
2,524,264 - Dshi_2389 0.46 -0.0
2,524,284 - Dshi_2389 0.49 +0.4
2,524,603 - +0.8
2,524,735 - +0.7
2,524,872 + Dshi_2390 0.26 +0.5
2,525,003 + Dshi_2390 0.46 -0.0
2,525,003 + Dshi_2390 0.46 -0.8
2,525,149 - Dshi_2390 0.69 +0.6
2,525,207 + Dshi_2390 0.78 -1.1
2,525,428 + +0.7
2,525,778 - -0.4
2,525,778 - +0.1

Or see this region's nucleotide sequence