Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02855 and SMc02856 are separated by 460 nucleotides SMc02856 and SMc02857 are separated by 216 nucleotides
SMc02855: SMc02855 - hypothetical protein, at 205,860 to 206,783
SMc02855
SMc02856: SMc02856 - penicillin-binding protein, at 207,244 to 209,547
SMc02856
SMc02857: SMc02857 - molecular chaperone DnaK, at 209,764 to 211,689
SMc02857
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.257 kb on + strand, within SMc02855 at 206.258 kb on - strand, within SMc02855 at 206.258 kb on - strand, within SMc02855 at 206.258 kb on - strand, within SMc02855 at 206.623 kb on + strand, within SMc02855 at 206.653 kb on + strand, within SMc02855 at 206.653 kb on + strand, within SMc02855 at 206.725 kb on + strand at 206.758 kb on + strand at 206.759 kb on - strand at 206.846 kb on - strand at 206.860 kb on - strand at 206.963 kb on + strand at 206.963 kb on + strand at 206.963 kb on + strand at 206.988 kb on + strand at 206.988 kb on + strand at 206.988 kb on + strand at 207.010 kb on + strand at 207.139 kb on + strand at 207.165 kb on - strand at 207.272 kb on + strand at 207.272 kb on + strand at 207.526 kb on + strand, within SMc02856 at 207.526 kb on + strand, within SMc02856 at 207.526 kb on + strand, within SMc02856 at 207.549 kb on - strand, within SMc02856 at 207.584 kb on - strand, within SMc02856 at 207.587 kb on - strand, within SMc02856 at 207.672 kb on - strand, within SMc02856 at 207.730 kb on + strand, within SMc02856 at 207.731 kb on - strand, within SMc02856 at 207.772 kb on + strand, within SMc02856 at 207.772 kb on + strand, within SMc02856 at 207.773 kb on - strand, within SMc02856 at 207.961 kb on + strand, within SMc02856 at 208.022 kb on - strand, within SMc02856 at 208.353 kb on + strand, within SMc02856 at 208.354 kb on - strand, within SMc02856 at 208.504 kb on + strand, within SMc02856 at 208.504 kb on + strand, within SMc02856 at 208.504 kb on + strand, within SMc02856 at 208.676 kb on - strand, within SMc02856 at 208.793 kb on + strand, within SMc02856 at 208.793 kb on + strand, within SMc02856 at 208.871 kb on - strand, within SMc02856 at 208.963 kb on + strand, within SMc02856 at 208.963 kb on + strand, within SMc02856 at 208.964 kb on - strand, within SMc02856 at 209.016 kb on + strand, within SMc02856 at 209.017 kb on - strand, within SMc02856 at 209.017 kb on - strand, within SMc02856 at 209.132 kb on - strand, within SMc02856 at 209.647 kb on + strand at 209.647 kb on + strand at 209.647 kb on + strand at 209.647 kb on + strand at 209.647 kb on + strand at 209.649 kb on + strand at 209.649 kb on + strand at 209.651 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 206,257 + SMc02855 0.43 -0.0 206,257 + SMc02855 0.43 +0.1 206,257 + SMc02855 0.43 +0.4 206,257 + SMc02855 0.43 -0.0 206,257 + SMc02855 0.43 +0.1 206,258 - SMc02855 0.43 +0.5 206,258 - SMc02855 0.43 +0.9 206,258 - SMc02855 0.43 -0.1 206,623 + SMc02855 0.83 -0.5 206,653 + SMc02855 0.86 +0.4 206,653 + SMc02855 0.86 +0.2 206,725 + -0.2 206,758 + -2.1 206,759 - +0.3 206,846 - -0.6 206,860 - +0.1 206,963 + +0.8 206,963 + +1.0 206,963 + -0.2 206,988 + +0.3 206,988 + -0.2 206,988 + -2.1 207,010 + -1.3 207,139 + -0.2 207,165 - -1.4 207,272 + +0.0 207,272 + -0.3 207,526 + SMc02856 0.12 -0.3 207,526 + SMc02856 0.12 -2.1 207,526 + SMc02856 0.12 -2.1 207,549 - SMc02856 0.13 -2.0 207,584 - SMc02856 0.15 -0.6 207,587 - SMc02856 0.15 -0.7 207,672 - SMc02856 0.19 -1.4 207,730 + SMc02856 0.21 -3.6 207,731 - SMc02856 0.21 -1.3 207,772 + SMc02856 0.23 -1.1 207,772 + SMc02856 0.23 -3.1 207,773 - SMc02856 0.23 -1.3 207,961 + SMc02856 0.31 -1.1 208,022 - SMc02856 0.34 -1.6 208,353 + SMc02856 0.48 -1.6 208,354 - SMc02856 0.48 -2.7 208,504 + SMc02856 0.55 -2.1 208,504 + SMc02856 0.55 +0.0 208,504 + SMc02856 0.55 -3.4 208,676 - SMc02856 0.62 -1.3 208,793 + SMc02856 0.67 -2.0 208,793 + SMc02856 0.67 -1.0 208,871 - SMc02856 0.71 -0.4 208,963 + SMc02856 0.75 -1.3 208,963 + SMc02856 0.75 -1.7 208,964 - SMc02856 0.75 -1.3 209,016 + SMc02856 0.77 -1.4 209,017 - SMc02856 0.77 -1.3 209,017 - SMc02856 0.77 -2.2 209,132 - SMc02856 0.82 -2.8 209,647 + +0.6 209,647 + -1.1 209,647 + +0.2 209,647 + +0.5 209,647 + -0.4 209,649 + +0.0 209,649 + +0.4 209,651 + +0.0
Or see this region's nucleotide sequence