Strain Fitness in Sinorhizobium meliloti 1021 around SMc02685

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02684 and SMc02685 are separated by 147 nucleotidesSMc02685 and SMc02686 are separated by 284 nucleotides SMc02684: SMc02684 - hydrolase/peptidase, at 2,533,035 to 2,534,186 SMc02684 SMc02685: SMc02685 - hypothetical protein, at 2,534,334 to 2,535,212 SMc02685 SMc02686: SMc02686 - ribose-phosphate pyrophosphokinase, at 2,535,497 to 2,536,429 SMc02686 Position (kb) 2534 2535 2536Strain fitness (log2 ratio) -3 -2 -1 0 1at 2533.381 kb on - strand, within SMc02684at 2533.768 kb on - strand, within SMc02684at 2533.768 kb on - strand, within SMc02684at 2533.830 kb on + strand, within SMc02684at 2533.831 kb on - strand, within SMc02684at 2533.864 kb on - strand, within SMc02684at 2534.121 kb on + strandat 2534.160 kb on + strandat 2534.177 kb on - strandat 2534.604 kb on - strand, within SMc02685at 2534.604 kb on - strand, within SMc02685at 2534.610 kb on + strand, within SMc02685at 2534.610 kb on + strand, within SMc02685at 2534.675 kb on - strand, within SMc02685at 2534.837 kb on + strand, within SMc02685at 2534.837 kb on + strand, within SMc02685at 2534.838 kb on - strand, within SMc02685at 2535.037 kb on - strand, within SMc02685at 2535.049 kb on + strand, within SMc02685at 2535.180 kb on + strandat 2535.181 kb on - strandat 2535.181 kb on - strandat 2535.211 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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2,533,381 - SMc02684 0.30 +0.2
2,533,768 - SMc02684 0.64 -0.3
2,533,768 - SMc02684 0.64 +0.9
2,533,830 + SMc02684 0.69 -0.8
2,533,831 - SMc02684 0.69 +0.2
2,533,864 - SMc02684 0.72 +0.2
2,534,121 + +0.2
2,534,160 + +0.2
2,534,177 - +0.2
2,534,604 - SMc02685 0.31 -1.7
2,534,604 - SMc02685 0.31 -0.1
2,534,610 + SMc02685 0.31 +0.1
2,534,610 + SMc02685 0.31 -3.0
2,534,675 - SMc02685 0.39 -3.3
2,534,837 + SMc02685 0.57 -2.4
2,534,837 + SMc02685 0.57 -1.9
2,534,838 - SMc02685 0.57 -1.0
2,535,037 - SMc02685 0.80 -3.1
2,535,049 + SMc02685 0.81 -1.7
2,535,180 + -0.7
2,535,181 - +0.7
2,535,181 - -2.8
2,535,211 - -0.2

Or see this region's nucleotide sequence