Strain Fitness in Sinorhizobium meliloti 1021 around SMc02683

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02682 and SMc02683 are separated by 162 nucleotidesSMc02683 and SMc02684 are separated by 1 nucleotides SMc02682: SMc02682 - hypothetical protein, at 2,530,958 to 2,532,076 SMc02682 SMc02683: SMc02683 - hypothetical protein, at 2,532,239 to 2,533,033 SMc02683 SMc02684: SMc02684 - hydrolase/peptidase, at 2,533,035 to 2,534,186 SMc02684 Position (kb) 2532 2533 2534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2532.028 kb on - strandat 2532.028 kb on - strandat 2532.074 kb on + strandat 2532.258 kb on + strandat 2532.691 kb on + strand, within SMc02683at 2532.692 kb on - strand, within SMc02683at 2532.812 kb on + strand, within SMc02683at 2532.813 kb on - strand, within SMc02683at 2532.813 kb on - strand, within SMc02683at 2532.959 kb on + strandat 2532.960 kb on - strandat 2532.992 kb on + strandat 2533.005 kb on + strandat 2533.062 kb on + strandat 2533.062 kb on + strandat 2533.062 kb on + strandat 2533.063 kb on - strandat 2533.121 kb on - strandat 2533.170 kb on + strand, within SMc02684at 2533.176 kb on + strand, within SMc02684at 2533.263 kb on - strand, within SMc02684at 2533.263 kb on - strandat 2533.288 kb on + strand, within SMc02684at 2533.288 kb on + strand, within SMc02684at 2533.381 kb on - strand, within SMc02684at 2533.768 kb on - strand, within SMc02684at 2533.768 kb on - strand, within SMc02684at 2533.830 kb on + strand, within SMc02684at 2533.831 kb on - strand, within SMc02684at 2533.864 kb on - strand, within SMc02684

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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2,532,028 - +0.2
2,532,028 - +0.2
2,532,074 + +0.4
2,532,258 + -3.8
2,532,691 + SMc02683 0.57 -1.9
2,532,692 - SMc02683 0.57 -1.7
2,532,812 + SMc02683 0.72 -0.4
2,532,813 - SMc02683 0.72 -2.4
2,532,813 - SMc02683 0.72 -0.9
2,532,959 + -2.4
2,532,960 - -3.0
2,532,992 + -1.8
2,533,005 + -0.3
2,533,062 + -0.1
2,533,062 + -0.3
2,533,062 + -0.1
2,533,063 - +0.2
2,533,121 - +1.1
2,533,170 + SMc02684 0.12 -0.4
2,533,176 + SMc02684 0.12 +0.5
2,533,263 - SMc02684 0.20 -0.7
2,533,263 - +0.9
2,533,288 + SMc02684 0.22 +0.4
2,533,288 + SMc02684 0.22 -0.8
2,533,381 - SMc02684 0.30 +0.2
2,533,768 - SMc02684 0.64 -0.3
2,533,768 - SMc02684 0.64 +0.9
2,533,830 + SMc02684 0.69 -0.8
2,533,831 - SMc02684 0.69 +0.2
2,533,864 - SMc02684 0.72 +0.2

Or see this region's nucleotide sequence