Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02608 and SMc02609 are separated by 94 nucleotides SMc02609 and SMc02610 are separated by 50 nucleotides
SMc02608: SMc02608 - sarcosine oxidase subunit beta, at 101,172 to 102,422
SMc02608
SMc02609: SMc02609 - transcriptional regulator, at 102,517 to 103,491
SMc02609
SMc02610: SMc02610 - amidotransferase, at 103,542 to 104,504
SMc02610
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2 at 101.528 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.582 kb on - strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.857 kb on + strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.858 kb on - strand, within SMc02608 at 101.981 kb on - strand, within SMc02608 at 102.034 kb on + strand, within SMc02608 at 102.034 kb on + strand, within SMc02608 at 102.148 kb on + strand, within SMc02608 at 102.175 kb on + strand, within SMc02608 at 102.176 kb on - strand, within SMc02608 at 102.225 kb on - strand, within SMc02608 at 102.226 kb on + strand, within SMc02608 at 102.226 kb on + strand, within SMc02608 at 102.227 kb on - strand, within SMc02608 at 102.227 kb on - strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.280 kb on + strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.281 kb on - strand, within SMc02608 at 102.437 kb on - strand at 102.458 kb on + strand at 102.592 kb on + strand at 102.649 kb on + strand, within SMc02609 at 102.750 kb on + strand, within SMc02609 at 102.750 kb on + strand, within SMc02609 at 102.796 kb on - strand, within SMc02609 at 102.858 kb on - strand, within SMc02609 at 102.858 kb on - strand, within SMc02609 at 103.099 kb on + strand, within SMc02609 at 103.100 kb on - strand, within SMc02609 at 103.394 kb on - strand at 103.394 kb on - strand at 103.394 kb on - strand at 103.562 kb on + strand at 103.592 kb on + strand at 103.592 kb on + strand at 103.722 kb on + strand, within SMc02610 at 103.722 kb on + strand, within SMc02610 at 103.723 kb on - strand, within SMc02610 at 103.924 kb on + strand, within SMc02610 at 103.924 kb on + strand, within SMc02610 at 103.925 kb on - strand, within SMc02610 at 103.925 kb on - strand, within SMc02610 at 103.925 kb on - strand, within SMc02610 at 103.959 kb on + strand, within SMc02610 at 104.006 kb on - strand, within SMc02610 at 104.006 kb on - strand, within SMc02610 at 104.040 kb on - strand, within SMc02610 at 104.120 kb on + strand, within SMc02610 at 104.217 kb on + strand, within SMc02610 at 104.218 kb on - strand, within SMc02610 at 104.297 kb on + strand, within SMc02610 at 104.298 kb on - strand, within SMc02610 at 104.385 kb on + strand, within SMc02610 at 104.385 kb on + strand, within SMc02610 at 104.385 kb on + strand, within SMc02610 at 104.386 kb on - strand, within SMc02610 at 104.473 kb on + strand at 104.474 kb on - strand at 104.474 kb on - strand at 104.475 kb on + strand at 104.476 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 101,528 - SMc02608 0.28 +0.0 101,582 - SMc02608 0.33 -0.1 101,582 - SMc02608 0.33 +0.5 101,857 + SMc02608 0.55 +0.2 101,857 + SMc02608 0.55 -1.8 101,858 - SMc02608 0.55 +1.0 101,858 - SMc02608 0.55 -0.1 101,981 - SMc02608 0.65 +0.5 102,034 + SMc02608 0.69 +0.2 102,034 + SMc02608 0.69 +0.7 102,148 + SMc02608 0.78 -0.1 102,175 + SMc02608 0.80 -0.5 102,176 - SMc02608 0.80 -1.2 102,225 - SMc02608 0.84 +0.0 102,226 + SMc02608 0.84 +0.1 102,226 + SMc02608 0.84 +0.5 102,227 - SMc02608 0.84 -1.1 102,227 - SMc02608 0.84 +0.7 102,280 + SMc02608 0.89 -0.3 102,280 + SMc02608 0.89 -0.4 102,280 + SMc02608 0.89 -0.9 102,281 - SMc02608 0.89 -0.4 102,281 - SMc02608 0.89 +0.1 102,281 - SMc02608 0.89 +0.5 102,281 - SMc02608 0.89 -0.2 102,437 - +2.6 102,458 + +0.0 102,592 + +0.4 102,649 + SMc02609 0.14 -0.2 102,750 + SMc02609 0.24 +1.0 102,750 + SMc02609 0.24 -1.5 102,796 - SMc02609 0.29 -0.1 102,858 - SMc02609 0.35 -2.0 102,858 - SMc02609 0.35 -1.1 103,099 + SMc02609 0.60 -0.3 103,100 - SMc02609 0.60 +0.0 103,394 - -0.2 103,394 - +0.4 103,394 - -0.1 103,562 + -0.2 103,592 + -1.4 103,592 + +0.2 103,722 + SMc02610 0.19 -0.0 103,722 + SMc02610 0.19 -1.8 103,723 - SMc02610 0.19 -0.5 103,924 + SMc02610 0.40 -0.3 103,924 + SMc02610 0.40 +0.5 103,925 - SMc02610 0.40 -0.7 103,925 - SMc02610 0.40 -0.2 103,925 - SMc02610 0.40 -0.2 103,959 + SMc02610 0.43 -0.4 104,006 - SMc02610 0.48 +0.0 104,006 - SMc02610 0.48 -1.0 104,040 - SMc02610 0.52 +0.2 104,120 + SMc02610 0.60 -0.1 104,217 + SMc02610 0.70 -0.1 104,218 - SMc02610 0.70 +0.0 104,297 + SMc02610 0.78 +0.2 104,298 - SMc02610 0.79 +1.0 104,385 + SMc02610 0.88 +0.7 104,385 + SMc02610 0.88 -0.1 104,385 + SMc02610 0.88 +1.0 104,386 - SMc02610 0.88 -1.1 104,473 + -0.5 104,474 - +0.2 104,474 - +0.2 104,475 + -0.9 104,476 - -1.5
Or see this region's nucleotide sequence