Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02156 and SMc02187 are separated by 319 nucleotides SMc02187 and SMc02202 overlap by 11 nucleotides SMc02202 and SMc02201 are separated by 156 nucleotides
SMc02156: SMc02156 - hypothetical protein, at 539,798 to 540,595
SMc02156
SMc02187: SMc02187 - integrase DNA protein, at 540,915 to 542,123
SMc02187
SMc02202: SMc02202 - hypothetical protein, at 542,113 to 542,955
SMc02202
SMc02201: SMc02201 - hypothetical protein, at 543,112 to 543,309
SMc02201
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 539.918 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.476 kb on - strand, within SMc02156 at 540.539 kb on + strand at 540.599 kb on + strand at 540.600 kb on - strand at 540.600 kb on - strand at 540.613 kb on + strand at 540.771 kb on - strand at 540.776 kb on - strand at 540.776 kb on - strand at 540.777 kb on + strand at 540.841 kb on + strand at 540.931 kb on - strand at 540.975 kb on + strand at 541.260 kb on - strand, within SMc02187 at 541.317 kb on - strand, within SMc02187 at 541.388 kb on + strand, within SMc02187 at 541.389 kb on - strand, within SMc02187 at 541.389 kb on - strand, within SMc02187 at 541.532 kb on + strand, within SMc02187 at 541.533 kb on - strand, within SMc02187 at 541.564 kb on + strand, within SMc02187 at 541.564 kb on + strand, within SMc02187 at 541.564 kb on + strand, within SMc02187 at 541.569 kb on + strand, within SMc02187 at 541.570 kb on - strand, within SMc02187 at 541.603 kb on + strand, within SMc02187 at 541.603 kb on + strand, within SMc02187 at 541.603 kb on + strand, within SMc02187 at 541.774 kb on + strand, within SMc02187 at 541.775 kb on - strand, within SMc02187 at 541.775 kb on - strand, within SMc02187 at 541.847 kb on + strand, within SMc02187 at 541.848 kb on - strand, within SMc02187 at 541.848 kb on - strand, within SMc02187 at 541.850 kb on + strand, within SMc02187 at 541.851 kb on - strand, within SMc02187 at 541.954 kb on + strand, within SMc02187 at 541.978 kb on + strand, within SMc02187 at 541.978 kb on + strand, within SMc02187 at 541.978 kb on + strand, within SMc02187 at 541.978 kb on + strand, within SMc02187 at 541.978 kb on + strand, within SMc02187 at 541.979 kb on - strand, within SMc02187 at 541.979 kb on - strand, within SMc02187 at 541.979 kb on - strand, within SMc02187 at 541.979 kb on - strand, within SMc02187 at 541.981 kb on + strand, within SMc02187 at 541.981 kb on + strand, within SMc02187 at 541.982 kb on - strand at 542.042 kb on - strand at 542.042 kb on - strand at 542.044 kb on - strand at 542.066 kb on - strand at 542.227 kb on - strand, within SMc02202 at 542.258 kb on - strand, within SMc02202 at 542.258 kb on - strand, within SMc02202 at 542.284 kb on - strand, within SMc02202 at 542.323 kb on - strand, within SMc02202 at 542.354 kb on + strand, within SMc02202 at 542.355 kb on - strand, within SMc02202 at 542.414 kb on + strand, within SMc02202 at 542.414 kb on + strand, within SMc02202 at 542.414 kb on + strand, within SMc02202 at 542.415 kb on - strand, within SMc02202 at 542.572 kb on - strand, within SMc02202 at 542.605 kb on + strand, within SMc02202 at 542.606 kb on - strand, within SMc02202 at 542.607 kb on + strand, within SMc02202 at 542.607 kb on + strand, within SMc02202 at 542.607 kb on + strand, within SMc02202 at 542.608 kb on - strand, within SMc02202 at 542.608 kb on - strand, within SMc02202 at 542.629 kb on + strand, within SMc02202 at 542.637 kb on + strand, within SMc02202 at 542.691 kb on + strand, within SMc02202 at 542.692 kb on - strand, within SMc02202 at 542.743 kb on + strand, within SMc02202 at 542.743 kb on + strand, within SMc02202 at 542.744 kb on - strand, within SMc02202 at 542.954 kb on - strand at 543.049 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 539,918 + SMc02156 0.15 +0.2 540,098 + SMc02156 0.38 +1.1 540,098 + SMc02156 0.38 -0.6 540,098 + SMc02156 0.38 +0.4 540,099 - SMc02156 0.38 +0.4 540,099 - SMc02156 0.38 -0.6 540,132 + SMc02156 0.42 -1.1 540,132 + SMc02156 0.42 +0.2 540,134 + SMc02156 0.42 -0.6 540,134 + SMc02156 0.42 +0.1 540,476 - SMc02156 0.85 -0.1 540,539 + -0.3 540,599 + +1.4 540,600 - -0.2 540,600 - +0.1 540,613 + -1.1 540,771 - -0.1 540,776 - +0.3 540,776 - +0.2 540,777 + -0.2 540,841 + +1.2 540,931 - -0.7 540,975 + -0.3 541,260 - SMc02187 0.29 +2.3 541,317 - SMc02187 0.33 -0.3 541,388 + SMc02187 0.39 -1.2 541,389 - SMc02187 0.39 -1.0 541,389 - SMc02187 0.39 +0.4 541,532 + SMc02187 0.51 +0.1 541,533 - SMc02187 0.51 +1.2 541,564 + SMc02187 0.54 +0.5 541,564 + SMc02187 0.54 +0.4 541,564 + SMc02187 0.54 +1.3 541,569 + SMc02187 0.54 -0.3 541,570 - SMc02187 0.54 -0.6 541,603 + SMc02187 0.57 +0.5 541,603 + SMc02187 0.57 +2.0 541,603 + SMc02187 0.57 +0.6 541,774 + SMc02187 0.71 +0.1 541,775 - SMc02187 0.71 -0.3 541,775 - SMc02187 0.71 +0.1 541,847 + SMc02187 0.77 +0.2 541,848 - SMc02187 0.77 +0.3 541,848 - SMc02187 0.77 -0.2 541,850 + SMc02187 0.77 +0.3 541,851 - SMc02187 0.77 +0.5 541,954 + SMc02187 0.86 +0.3 541,978 + SMc02187 0.88 -2.0 541,978 + SMc02187 0.88 +0.3 541,978 + SMc02187 0.88 +0.3 541,978 + SMc02187 0.88 -0.6 541,978 + SMc02187 0.88 +0.2 541,979 - SMc02187 0.88 +1.3 541,979 - SMc02187 0.88 +0.3 541,979 - SMc02187 0.88 -0.9 541,979 - SMc02187 0.88 +0.9 541,981 + SMc02187 0.88 +0.5 541,981 + SMc02187 0.88 +0.3 541,982 - +3.0 542,042 - -1.8 542,042 - +0.2 542,044 - -1.7 542,066 - +0.2 542,227 - SMc02202 0.14 +1.2 542,258 - SMc02202 0.17 +0.1 542,258 - SMc02202 0.17 +0.1 542,284 - SMc02202 0.20 -0.2 542,323 - SMc02202 0.25 +0.6 542,354 + SMc02202 0.29 +0.6 542,355 - SMc02202 0.29 -0.0 542,414 + SMc02202 0.36 +0.2 542,414 + SMc02202 0.36 -0.1 542,414 + SMc02202 0.36 -0.0 542,415 - SMc02202 0.36 -0.8 542,572 - SMc02202 0.54 +0.2 542,605 + SMc02202 0.58 +0.3 542,606 - SMc02202 0.58 +0.6 542,607 + SMc02202 0.59 -0.1 542,607 + SMc02202 0.59 +1.7 542,607 + SMc02202 0.59 -0.2 542,608 - SMc02202 0.59 +0.6 542,608 - SMc02202 0.59 +0.2 542,629 + SMc02202 0.61 +0.9 542,637 + SMc02202 0.62 +0.8 542,691 + SMc02202 0.69 -0.1 542,692 - SMc02202 0.69 +0.9 542,743 + SMc02202 0.75 +0.2 542,743 + SMc02202 0.75 -0.5 542,744 - SMc02202 0.75 +0.0 542,954 - +0.3 543,049 + +1.4
Or see this region's nucleotide sequence