Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02166 and SMc02165 are separated by 17 nucleotides SMc02165 and SMc02164 are separated by 56 nucleotides
SMc02166: SMc02166 - dihydroorotase, at 527,870 to 528,913
SMc02166
SMc02165: SMc02165 - orotate phosphoribosyltransferase, at 528,931 to 529,629
SMc02165
SMc02164: SMc02164 - fructokinase, at 529,686 to 530,612
SMc02164
Position (kb) 528
529
530 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.096 kb on - strand, within SMc02166 at 528.170 kb on + strand, within SMc02166 at 528.171 kb on - strand, within SMc02166 at 528.417 kb on - strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.515 kb on + strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.516 kb on - strand, within SMc02166 at 528.518 kb on + strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.519 kb on - strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.665 kb on + strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 528.666 kb on - strand, within SMc02166 at 529.030 kb on + strand, within SMc02165 at 529.065 kb on + strand, within SMc02165 at 529.091 kb on - strand, within SMc02165 at 529.195 kb on - strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.248 kb on - strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.295 kb on - strand, within SMc02165 at 529.297 kb on - strand, within SMc02165 at 529.423 kb on + strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.665 kb on + strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.851 kb on - strand, within SMc02164 at 530.143 kb on - strand, within SMc02164 at 530.363 kb on + strand, within SMc02164
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 528,096 - SMc02166 0.22 -2.2 528,096 - SMc02166 0.22 -4.8 528,096 - SMc02166 0.22 -3.8 528,170 + SMc02166 0.29 -2.7 528,171 - SMc02166 0.29 -1.8 528,417 - SMc02166 0.52 -2.6 528,515 + SMc02166 0.62 -1.6 528,515 + SMc02166 0.62 -4.7 528,516 - SMc02166 0.62 -5.1 528,516 - SMc02166 0.62 -3.2 528,518 + SMc02166 0.62 -3.3 528,519 - SMc02166 0.62 -3.6 528,519 - SMc02166 0.62 -3.8 528,665 + SMc02166 0.76 -5.2 528,665 + SMc02166 0.76 -2.6 528,665 + SMc02166 0.76 -3.7 528,666 - SMc02166 0.76 -2.8 528,666 - SMc02166 0.76 -1.6 529,030 + SMc02165 0.14 -3.9 529,065 + SMc02165 0.19 -4.1 529,091 - SMc02165 0.23 -3.4 529,195 - SMc02165 0.38 -1.3 529,243 + SMc02165 0.45 -3.5 529,243 + SMc02165 0.45 -2.4 529,243 + SMc02165 0.45 -3.1 529,243 + SMc02165 0.45 -2.4 529,243 + SMc02165 0.45 -1.6 529,244 - SMc02165 0.45 -1.6 529,244 - SMc02165 0.45 -3.8 529,248 - SMc02165 0.45 -3.0 529,294 + SMc02165 0.52 -2.8 529,294 + SMc02165 0.52 -3.3 529,294 + SMc02165 0.52 -2.4 529,294 + SMc02165 0.52 -2.0 529,295 - SMc02165 0.52 -3.6 529,297 - SMc02165 0.52 -2.8 529,423 + SMc02165 0.70 -2.9 529,424 - SMc02165 0.71 -1.3 529,424 - SMc02165 0.71 -4.0 529,480 + SMc02165 0.79 -4.3 529,480 + SMc02165 0.79 -4.2 529,481 - SMc02165 0.79 -3.5 529,481 - SMc02165 0.79 -2.8 529,665 + -2.0 529,666 - +0.9 529,666 - +2.4 529,666 - +0.8 529,666 - -0.6 529,666 - -0.2 529,851 - SMc02164 0.18 +1.3 530,143 - SMc02164 0.49 +0.5 530,363 + SMc02164 0.73 +1.8
Or see this region's nucleotide sequence