Strain Fitness in Sinorhizobium meliloti 1021 around SMc01364

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01365 and SMc01364 are separated by 2 nucleotidesSMc01364 and SMc01363 are separated by 191 nucleotides SMc01365: SMc01365 - exoribonuclease II protein, at 1,414,625 to 1,416,994 SMc01365 SMc01364: SMc01364 - DNA topoisomerase I, at 1,416,997 to 1,419,699 SMc01364 SMc01363: SMc01363 - hypothetical protein, at 1,419,891 to 1,421,042 SMc01363 Position (kb) 1416 1417 1418 1419 1420Strain fitness (log2 ratio) -2 -1 0 1 2at 1416.086 kb on + strand, within SMc01365at 1416.086 kb on + strand, within SMc01365at 1416.190 kb on + strand, within SMc01365at 1416.191 kb on - strand, within SMc01365at 1416.474 kb on + strand, within SMc01365at 1416.475 kb on - strand, within SMc01365at 1416.664 kb on + strand, within SMc01365at 1416.664 kb on + strand, within SMc01365at 1416.774 kb on - strandat 1417.265 kb on + strandat 1417.266 kb on - strandat 1417.266 kb on - strandat 1417.294 kb on - strand, within SMc01364at 1417.294 kb on - strandat 1419.781 kb on + strandat 1419.781 kb on + strandat 1419.782 kb on - strandat 1419.782 kb on - strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.785 kb on + strandat 1419.786 kb on - strandat 1419.786 kb on - strandat 1419.786 kb on - strandat 1419.786 kb on - strandat 1419.787 kb on + strandat 1419.788 kb on - strandat 1419.912 kb on + strandat 1419.912 kb on + strandat 1419.971 kb on + strandat 1419.971 kb on + strandat 1419.971 kb on + strandat 1419.972 kb on - strandat 1419.972 kb on - strandat 1419.998 kb on + strandat 1419.999 kb on - strandat 1419.999 kb on - strandat 1419.999 kb on - strandat 1420.294 kb on + strand, within SMc01363

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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1,416,086 + SMc01365 0.62 -0.4
1,416,086 + SMc01365 0.62 -0.9
1,416,190 + SMc01365 0.66 +0.2
1,416,191 - SMc01365 0.66 -1.3
1,416,474 + SMc01365 0.78 -0.3
1,416,475 - SMc01365 0.78 +0.3
1,416,664 + SMc01365 0.86 -0.8
1,416,664 + SMc01365 0.86 -0.1
1,416,774 - -0.3
1,417,265 + -1.3
1,417,266 - +0.0
1,417,266 - -1.3
1,417,294 - SMc01364 0.11 -1.1
1,417,294 - -0.7
1,419,781 + +1.9
1,419,781 + -2.3
1,419,782 - +0.3
1,419,782 - -0.4
1,419,785 + -0.1
1,419,785 + -0.7
1,419,785 + +0.2
1,419,785 + -0.8
1,419,785 + +0.0
1,419,786 - +0.7
1,419,786 - -0.1
1,419,786 - -0.5
1,419,786 - +0.0
1,419,787 + -1.6
1,419,788 - +0.5
1,419,912 + +2.3
1,419,912 + +1.1
1,419,971 + -0.2
1,419,971 + +0.6
1,419,971 + +0.1
1,419,972 - -1.4
1,419,972 - +0.5
1,419,998 + +0.3
1,419,999 - +0.2
1,419,999 - +1.4
1,419,999 - +1.1
1,420,294 + SMc01363 0.35 +0.5

Or see this region's nucleotide sequence