Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00810 and SMc00811 overlap by 4 nucleotides SMc00811 and SMc00812 are separated by 4 nucleotides SMc00812 and SMc00813 are separated by 77 nucleotides
SMc00810: SMc00810 - hypothetical protein, at 830,836 to 832,176
SMc00810
SMc00811: SMc00811 - cell division protein, at 832,173 to 832,910
SMc00811
SMc00812: SMc00812 - hypothetical protein, at 832,915 to 833,298
SMc00812
SMc00813: SMc00813 - transport transmembrane protein, at 833,376 to 834,788
SMc00813
Position (kb) 832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 832.908 kb on + strand at 832.908 kb on + strand at 832.908 kb on + strand at 832.922 kb on + strand at 832.922 kb on + strand at 832.922 kb on + strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.923 kb on - strand at 832.924 kb on + strand at 832.924 kb on + strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.925 kb on - strand at 832.970 kb on - strand, within SMc00812 at 833.242 kb on + strand, within SMc00812 at 833.242 kb on + strand, within SMc00812 at 833.242 kb on + strand, within SMc00812 at 833.356 kb on + strand at 833.377 kb on + strand at 833.377 kb on + strand at 833.378 kb on - strand at 833.378 kb on - strand at 833.617 kb on - strand, within SMc00813 at 833.617 kb on - strand, within SMc00813 at 833.746 kb on + strand, within SMc00813 at 833.746 kb on + strand, within SMc00813 at 833.746 kb on + strand, within SMc00813 at 833.747 kb on - strand, within SMc00813 at 833.979 kb on + strand, within SMc00813 at 833.980 kb on - strand, within SMc00813 at 833.980 kb on - strand, within SMc00813 at 834.080 kb on + strand, within SMc00813 at 834.080 kb on + strand, within SMc00813 at 834.081 kb on - strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.082 kb on + strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.083 kb on - strand, within SMc00813 at 834.086 kb on - strand, within SMc00813 at 834.215 kb on + strand, within SMc00813 at 834.256 kb on + strand, within SMc00813 at 834.256 kb on + strand, within SMc00813 at 834.257 kb on - strand, within SMc00813
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 832,908 + -0.2 832,908 + +0.8 832,908 + +0.6 832,922 + -1.3 832,922 + +0.3 832,922 + -3.4 832,923 - +0.1 832,923 - -0.8 832,923 - -0.2 832,923 - +0.1 832,923 - +0.0 832,923 - -0.2 832,924 + -0.3 832,924 + -1.0 832,925 - -0.4 832,925 - -0.4 832,925 - -0.2 832,925 - +0.3 832,970 - SMc00812 0.14 -1.0 833,242 + SMc00812 0.85 +0.2 833,242 + SMc00812 0.85 +0.5 833,242 + SMc00812 0.85 +1.5 833,356 + -0.1 833,377 + +0.4 833,377 + +0.1 833,378 - -1.0 833,378 - -1.8 833,617 - SMc00813 0.17 -0.0 833,617 - SMc00813 0.17 -0.4 833,746 + SMc00813 0.26 -0.1 833,746 + SMc00813 0.26 +0.0 833,746 + SMc00813 0.26 +1.0 833,747 - SMc00813 0.26 +0.5 833,979 + SMc00813 0.43 -1.8 833,980 - SMc00813 0.43 +0.8 833,980 - SMc00813 0.43 +2.6 834,080 + SMc00813 0.50 -0.1 834,080 + SMc00813 0.50 +0.3 834,081 - SMc00813 0.50 +0.2 834,082 + SMc00813 0.50 -0.1 834,082 + SMc00813 0.50 -0.8 834,082 + SMc00813 0.50 +0.4 834,083 - SMc00813 0.50 -0.8 834,083 - SMc00813 0.50 +1.3 834,083 - SMc00813 0.50 -0.6 834,083 - SMc00813 0.50 -0.0 834,083 - SMc00813 0.50 +0.5 834,086 - SMc00813 0.50 +0.3 834,215 + SMc00813 0.59 +0.2 834,256 + SMc00813 0.62 -0.2 834,256 + SMc00813 0.62 +0.4 834,257 - SMc00813 0.62 +0.6
Or see this region's nucleotide sequence