Strain Fitness in Sinorhizobium meliloti 1021 around SMc00655

Experiment: Min media with glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc00657 and SMc00656 are separated by 150 nucleotidesSMc00656 and SMc00655 are separated by 172 nucleotidesSMc00655 and SMc00654 are separated by 550 nucleotides SMc00657: SMc00657 - hypothetical protein, at 2,920,299 to 2,920,574 SMc00657 SMc00656: SMc00656 - hypothetical protein, at 2,920,725 to 2,921,006 SMc00656 SMc00655: SMc00655 - hypothetical protein, at 2,921,179 to 2,921,529 SMc00655 SMc00654: SMc00654 - response regulator,controls chromosomal replication initiation protein, at 2,922,080 to 2,922,781 SMc00654 Position (kb) 2921 2922Strain fitness (log2 ratio) -1 0 1at 2920.690 kb on + strandat 2920.691 kb on - strandat 2920.803 kb on + strand, within SMc00656at 2920.804 kb on - strand, within SMc00656at 2921.007 kb on + strandat 2921.008 kb on - strandat 2921.092 kb on + strandat 2921.093 kb on - strandat 2921.157 kb on - strandat 2921.168 kb on + strandat 2921.169 kb on - strandat 2921.634 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
remove
2,920,690 + +0.4
2,920,691 - -0.3
2,920,803 + SMc00656 0.28 +0.7
2,920,804 - SMc00656 0.28 -1.4
2,921,007 + -0.5
2,921,008 - +0.5
2,921,092 + +0.4
2,921,093 - +0.5
2,921,157 - +1.1
2,921,168 + -1.2
2,921,169 - -0.6
2,921,634 - -0.9

Or see this region's nucleotide sequence