Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0760 and SMa0762 are separated by 79 nucleotides SMa0762 and SMa0763 are separated by 11 nucleotides SMa0763 and SMa0765 are separated by 102 nucleotides
SMa0760: SMa0760 - FixT2 anti-kinase, at 412,363 to 412,710
SMa0760
SMa0762: SMa0762 - transcriptional regulator FixK, at 412,790 to 413,425
SMa0762
SMa0763: SMa0763 - hypothetical protein, at 413,437 to 414,084
SMa0763
SMa0765: SMa0765 - cbb3-type cytochrome c oxidase subunit I, at 414,187 to 415,806
SMa0765
Position (kb) 413
414
415 Strain fitness (log2 ratio) -2
-1
0
1
2 at 412.448 kb on - strand, within SMa0760 at 412.633 kb on + strand, within SMa0760 at 412.705 kb on - strand at 412.718 kb on + strand at 412.734 kb on + strand at 412.794 kb on - strand at 413.544 kb on + strand, within SMa0763 at 413.597 kb on + strand, within SMa0763 at 413.598 kb on - strand, within SMa0763 at 413.615 kb on + strand, within SMa0763 at 413.640 kb on - strand, within SMa0763 at 413.650 kb on + strand, within SMa0763 at 413.651 kb on - strand, within SMa0763 at 413.864 kb on + strand, within SMa0763 at 413.948 kb on + strand, within SMa0763 at 413.949 kb on - strand, within SMa0763 at 414.004 kb on - strand at 414.213 kb on - strand at 414.213 kb on - strand at 414.213 kb on - strand at 414.290 kb on + strand at 414.386 kb on - strand, within SMa0765 at 414.593 kb on - strand, within SMa0765 at 414.593 kb on - strand, within SMa0765 at 414.694 kb on + strand, within SMa0765 at 414.709 kb on - strand, within SMa0765 at 414.768 kb on - strand, within SMa0765 at 414.768 kb on - strand, within SMa0765 at 414.778 kb on + strand, within SMa0765 at 414.829 kb on + strand, within SMa0765 at 414.829 kb on + strand, within SMa0765 at 414.829 kb on + strand, within SMa0765 at 414.830 kb on - strand, within SMa0765 at 414.848 kb on - strand, within SMa0765 at 414.976 kb on + strand, within SMa0765 at 414.976 kb on + strand, within SMa0765 at 415.030 kb on + strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.031 kb on - strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.033 kb on + strand, within SMa0765 at 415.034 kb on - strand, within SMa0765 at 415.052 kb on + strand, within SMa0765 at 415.066 kb on + strand, within SMa0765 at 415.067 kb on - strand, within SMa0765
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 412,448 - SMa0760 0.24 -0.0 412,633 + SMa0760 0.78 -0.9 412,705 - +0.9 412,718 + -1.6 412,734 + +0.3 412,794 - -1.3 413,544 + SMa0763 0.17 -0.9 413,597 + SMa0763 0.25 +1.0 413,598 - SMa0763 0.25 -0.1 413,615 + SMa0763 0.27 +0.3 413,640 - SMa0763 0.31 +0.7 413,650 + SMa0763 0.33 -0.3 413,651 - SMa0763 0.33 +0.8 413,864 + SMa0763 0.66 +0.5 413,948 + SMa0763 0.79 +1.0 413,949 - SMa0763 0.79 +0.5 414,004 - -1.6 414,213 - +0.1 414,213 - +0.2 414,213 - +0.4 414,290 + +0.4 414,386 - SMa0765 0.12 +0.8 414,593 - SMa0765 0.25 +1.8 414,593 - SMa0765 0.25 +0.1 414,694 + SMa0765 0.31 -0.9 414,709 - SMa0765 0.32 -0.0 414,768 - SMa0765 0.36 -0.0 414,768 - SMa0765 0.36 +1.0 414,778 + SMa0765 0.36 -1.3 414,829 + SMa0765 0.40 -0.0 414,829 + SMa0765 0.40 -2.2 414,829 + SMa0765 0.40 -0.6 414,830 - SMa0765 0.40 -0.3 414,848 - SMa0765 0.41 +0.5 414,976 + SMa0765 0.49 +0.6 414,976 + SMa0765 0.49 +0.4 415,030 + SMa0765 0.52 -1.6 415,031 - SMa0765 0.52 +0.0 415,031 - SMa0765 0.52 +0.2 415,031 - SMa0765 0.52 -0.0 415,031 - SMa0765 0.52 +0.8 415,033 + SMa0765 0.52 +1.0 415,033 + SMa0765 0.52 +0.6 415,033 + SMa0765 0.52 -0.1 415,033 + SMa0765 0.52 -1.0 415,034 - SMa0765 0.52 +0.4 415,052 + SMa0765 0.53 +1.3 415,066 + SMa0765 0.54 -0.2 415,067 - SMa0765 0.54 +0.5
Or see this region's nucleotide sequence