Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21081 and SM_b21082 are separated by 31 nucleotides SM_b21082 and SM_b21083 are separated by 135 nucleotides SM_b21083 and SM_b21084 overlap by 4 nucleotides SM_b21084 and SM_b21085 are separated by 62 nucleotides
SM_b21081: SM_b21081 - phosphoglucomutase phosphomannomutase, at 718,406 to 719,953
_b21081
SM_b21082: SM_b21082 - mannose-6-phosphate isomerase, GDP-mannose pyrophosphorylase, at 719,985 to 722,288
_b21082
SM_b21083: SM_b21083 - hypothetical protein, at 722,424 to 722,867
_b21083
SM_b21084: SM_b21084 - hypothetical protein, at 722,864 to 723,217
_b21084
SM_b21085: SM_b21085 - hypothetical protein, at 723,280 to 724,932
_b21085
Position (kb) 719
720
721
722
723 Strain fitness (log2 ratio) -1
0
1
2 at 719.142 kb on - strand, within SM_b21081 at 719.142 kb on - strand, within SM_b21081 at 719.143 kb on + strand, within SM_b21081 at 719.144 kb on - strand, within SM_b21081 at 719.314 kb on + strand, within SM_b21081 at 719.418 kb on - strand, within SM_b21081 at 719.438 kb on + strand, within SM_b21081 at 719.438 kb on + strand, within SM_b21081 at 719.438 kb on + strand, within SM_b21081 at 719.439 kb on - strand, within SM_b21081 at 719.439 kb on - strand, within SM_b21081 at 719.439 kb on - strand, within SM_b21081 at 719.528 kb on + strand, within SM_b21081 at 719.528 kb on + strand, within SM_b21081 at 719.907 kb on + strand at 719.936 kb on + strand at 719.952 kb on - strand at 720.257 kb on + strand, within SM_b21082 at 720.322 kb on + strand, within SM_b21082 at 720.322 kb on + strand, within SM_b21082 at 720.323 kb on - strand, within SM_b21082 at 720.372 kb on - strand, within SM_b21082 at 720.389 kb on - strand, within SM_b21082 at 720.453 kb on + strand, within SM_b21082 at 720.453 kb on + strand, within SM_b21082 at 720.459 kb on + strand, within SM_b21082 at 720.460 kb on - strand, within SM_b21082 at 720.460 kb on - strand, within SM_b21082 at 720.463 kb on + strand, within SM_b21082 at 720.463 kb on + strand, within SM_b21082 at 720.540 kb on + strand, within SM_b21082 at 720.541 kb on - strand, within SM_b21082 at 720.541 kb on - strand, within SM_b21082 at 720.541 kb on - strand, within SM_b21082 at 720.541 kb on - strand, within SM_b21082 at 720.690 kb on + strand, within SM_b21082 at 720.690 kb on + strand, within SM_b21082 at 720.691 kb on - strand, within SM_b21082 at 720.691 kb on - strand, within SM_b21082 at 720.691 kb on - strand, within SM_b21082 at 720.739 kb on - strand, within SM_b21082 at 720.739 kb on - strand, within SM_b21082 at 720.790 kb on - strand, within SM_b21082 at 720.828 kb on - strand, within SM_b21082 at 720.837 kb on - strand, within SM_b21082 at 720.898 kb on - strand, within SM_b21082 at 721.027 kb on + strand, within SM_b21082 at 721.027 kb on + strand, within SM_b21082 at 721.027 kb on + strand, within SM_b21082 at 721.028 kb on - strand, within SM_b21082 at 721.148 kb on + strand, within SM_b21082 at 721.149 kb on - strand, within SM_b21082 at 721.230 kb on - strand, within SM_b21082 at 721.230 kb on - strand, within SM_b21082 at 721.255 kb on - strand, within SM_b21082 at 721.413 kb on + strand, within SM_b21082 at 721.413 kb on + strand, within SM_b21082 at 721.413 kb on + strand, within SM_b21082 at 721.452 kb on + strand, within SM_b21082 at 721.534 kb on + strand, within SM_b21082 at 721.589 kb on + strand, within SM_b21082 at 721.589 kb on + strand, within SM_b21082 at 721.589 kb on + strand, within SM_b21082 at 721.589 kb on + strand, within SM_b21082 at 721.589 kb on + strand at 721.590 kb on - strand, within SM_b21082 at 721.590 kb on - strand, within SM_b21082 at 721.590 kb on - strand, within SM_b21082 at 721.590 kb on - strand, within SM_b21082 at 721.590 kb on - strand, within SM_b21082 at 721.723 kb on - strand, within SM_b21082 at 721.866 kb on + strand, within SM_b21082 at 721.867 kb on - strand, within SM_b21082 at 722.072 kb on + strand at 722.155 kb on + strand at 722.155 kb on + strand at 722.155 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.160 kb on + strand at 722.161 kb on - strand at 722.161 kb on - strand at 722.188 kb on - strand at 722.214 kb on + strand at 722.273 kb on + strand at 722.273 kb on + strand at 722.312 kb on + strand at 722.313 kb on - strand at 722.316 kb on + strand at 722.337 kb on - strand at 722.337 kb on - strand at 722.362 kb on - strand at 722.369 kb on - strand at 723.140 kb on + strand, within SM_b21084 at 723.140 kb on + strand, within SM_b21084 at 723.219 kb on + strand at 723.220 kb on - strand at 723.220 kb on - strand at 723.221 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 719,142 - SM_b21081 0.48 +2.0 719,142 - SM_b21081 0.48 +2.5 719,143 + SM_b21081 0.48 +0.0 719,144 - SM_b21081 0.48 +0.2 719,314 + SM_b21081 0.59 +0.1 719,418 - SM_b21081 0.65 +1.2 719,438 + SM_b21081 0.67 +0.0 719,438 + SM_b21081 0.67 -1.7 719,438 + SM_b21081 0.67 +2.5 719,439 - SM_b21081 0.67 +1.6 719,439 - SM_b21081 0.67 +0.2 719,439 - SM_b21081 0.67 -0.6 719,528 + SM_b21081 0.72 -0.1 719,528 + SM_b21081 0.72 -0.2 719,907 + -0.6 719,936 + -0.5 719,952 - +0.1 720,257 + SM_b21082 0.12 -0.1 720,322 + SM_b21082 0.15 +0.5 720,322 + SM_b21082 0.15 +0.4 720,323 - SM_b21082 0.15 +0.6 720,372 - SM_b21082 0.17 -0.0 720,389 - SM_b21082 0.18 +1.4 720,453 + SM_b21082 0.20 +0.6 720,453 + SM_b21082 0.20 -0.3 720,459 + SM_b21082 0.21 +0.6 720,460 - SM_b21082 0.21 -1.2 720,460 - SM_b21082 0.21 -0.2 720,463 + SM_b21082 0.21 +0.4 720,463 + SM_b21082 0.21 -0.1 720,540 + SM_b21082 0.24 +1.6 720,541 - SM_b21082 0.24 +1.0 720,541 - SM_b21082 0.24 +0.6 720,541 - SM_b21082 0.24 +0.6 720,541 - SM_b21082 0.24 -1.1 720,690 + SM_b21082 0.31 +0.7 720,690 + SM_b21082 0.31 +0.5 720,691 - SM_b21082 0.31 -1.1 720,691 - SM_b21082 0.31 +0.3 720,691 - SM_b21082 0.31 -0.7 720,739 - SM_b21082 0.33 +1.3 720,739 - SM_b21082 0.33 +1.3 720,790 - SM_b21082 0.35 -0.2 720,828 - SM_b21082 0.37 +1.2 720,837 - SM_b21082 0.37 -0.0 720,898 - SM_b21082 0.40 -0.2 721,027 + SM_b21082 0.45 +0.8 721,027 + SM_b21082 0.45 -0.4 721,027 + SM_b21082 0.45 -0.3 721,028 - SM_b21082 0.45 -0.4 721,148 + SM_b21082 0.50 +0.5 721,149 - SM_b21082 0.51 +0.1 721,230 - SM_b21082 0.54 +0.2 721,230 - SM_b21082 0.54 +0.0 721,255 - SM_b21082 0.55 -1.0 721,413 + SM_b21082 0.62 -0.3 721,413 + SM_b21082 0.62 -0.6 721,413 + SM_b21082 0.62 -0.9 721,452 + SM_b21082 0.64 +0.3 721,534 + SM_b21082 0.67 +1.1 721,589 + SM_b21082 0.70 +0.1 721,589 + SM_b21082 0.70 +0.7 721,589 + SM_b21082 0.70 +1.0 721,589 + SM_b21082 0.70 +0.4 721,589 + +1.0 721,590 - SM_b21082 0.70 +0.3 721,590 - SM_b21082 0.70 +0.1 721,590 - SM_b21082 0.70 -0.6 721,590 - SM_b21082 0.70 +1.2 721,590 - SM_b21082 0.70 +0.4 721,723 - SM_b21082 0.75 +0.3 721,866 + SM_b21082 0.82 -0.0 721,867 - SM_b21082 0.82 -0.2 722,072 + -0.6 722,155 + +0.4 722,155 + +0.5 722,155 + -0.5 722,160 + -0.0 722,160 + -1.1 722,160 + -0.1 722,160 + +0.6 722,160 + +2.3 722,160 + +0.0 722,160 + -0.3 722,160 + +0.5 722,161 - +0.1 722,161 - -0.3 722,188 - +0.2 722,214 + -0.3 722,273 + -1.3 722,273 + +0.1 722,312 + +1.1 722,313 - -0.1 722,316 + -0.9 722,337 - +0.1 722,337 - +1.0 722,362 - -0.1 722,369 - -0.0 723,140 + SM_b21084 0.78 +1.3 723,140 + SM_b21084 0.78 -0.3 723,219 + -0.2 723,220 - -0.3 723,220 - -0.1 723,221 + +0.2
Or see this region's nucleotide sequence