Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21050 and SM_b21051 are separated by 150 nucleotides SM_b21051 and SM_b21052 are separated by 303 nucleotides
SM_b21050: SM_b21050 - PST type surface saccharide translocase, ExoT protein, at 682,224 to 683,777
_b21050
SM_b21051: SM_b21051 - udpglucosegdpmannose dehydrogenase, at 683,928 to 685,277
_b21051
SM_b21052: SM_b21052 - epimerase dehydratase, at 685,581 to 686,546
_b21052
Position (kb) 683
684
685
686 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 682.929 kb on + strand, within SM_b21050 at 682.990 kb on + strand, within SM_b21050 at 683.108 kb on - strand, within SM_b21050 at 683.108 kb on - strand at 683.108 kb on - strand, within SM_b21050 at 683.323 kb on + strand, within SM_b21050 at 683.323 kb on + strand, within SM_b21050 at 683.361 kb on + strand, within SM_b21050 at 683.361 kb on + strand, within SM_b21050 at 683.415 kb on + strand, within SM_b21050 at 683.415 kb on + strand, within SM_b21050 at 683.416 kb on - strand, within SM_b21050 at 683.416 kb on - strand, within SM_b21050 at 683.416 kb on - strand, within SM_b21050 at 683.418 kb on - strand, within SM_b21050 at 683.459 kb on + strand, within SM_b21050 at 683.474 kb on - strand, within SM_b21050 at 683.474 kb on - strand, within SM_b21050 at 683.526 kb on + strand, within SM_b21050 at 683.526 kb on + strand, within SM_b21050 at 683.526 kb on + strand, within SM_b21050 at 683.531 kb on - strand, within SM_b21050 at 683.531 kb on - strand, within SM_b21050 at 683.531 kb on - strand, within SM_b21050 at 683.537 kb on + strand, within SM_b21050 at 683.537 kb on + strand, within SM_b21050 at 683.538 kb on - strand, within SM_b21050 at 683.538 kb on - strand, within SM_b21050 at 683.538 kb on - strand, within SM_b21050 at 683.546 kb on + strand, within SM_b21050 at 683.618 kb on + strand, within SM_b21050 at 683.619 kb on - strand, within SM_b21050 at 683.700 kb on + strand at 683.700 kb on + strand at 683.700 kb on + strand at 683.700 kb on + strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.701 kb on - strand at 683.761 kb on + strand at 683.761 kb on + strand at 683.761 kb on + strand at 683.762 kb on - strand at 683.858 kb on - strand at 683.858 kb on - strand at 683.858 kb on - strand at 683.883 kb on + strand at 683.884 kb on - strand at 683.899 kb on + strand at 683.900 kb on - strand at 683.930 kb on - strand at 683.930 kb on - strand at 683.937 kb on + strand at 683.938 kb on - strand at 683.945 kb on + strand at 683.945 kb on + strand at 683.946 kb on - strand at 683.946 kb on - strand at 684.089 kb on + strand, within SM_b21051 at 684.090 kb on - strand, within SM_b21051 at 684.111 kb on + strand, within SM_b21051 at 684.112 kb on - strand, within SM_b21051 at 684.121 kb on + strand, within SM_b21051 at 684.122 kb on - strand, within SM_b21051 at 684.147 kb on + strand, within SM_b21051 at 684.147 kb on + strand, within SM_b21051 at 684.148 kb on - strand, within SM_b21051 at 684.151 kb on + strand, within SM_b21051 at 684.152 kb on - strand, within SM_b21051 at 684.163 kb on + strand, within SM_b21051 at 684.164 kb on - strand, within SM_b21051 at 684.227 kb on + strand, within SM_b21051 at 684.247 kb on + strand, within SM_b21051 at 684.247 kb on + strand, within SM_b21051 at 684.248 kb on - strand, within SM_b21051 at 684.265 kb on - strand, within SM_b21051 at 684.334 kb on + strand, within SM_b21051 at 684.334 kb on + strand, within SM_b21051 at 684.335 kb on - strand, within SM_b21051 at 684.366 kb on + strand, within SM_b21051 at 684.366 kb on + strand, within SM_b21051 at 684.367 kb on - strand, within SM_b21051 at 684.372 kb on + strand, within SM_b21051 at 684.387 kb on + strand, within SM_b21051 at 684.388 kb on - strand, within SM_b21051 at 684.388 kb on - strand, within SM_b21051 at 684.395 kb on - strand, within SM_b21051 at 684.418 kb on + strand, within SM_b21051 at 684.419 kb on - strand, within SM_b21051 at 684.476 kb on + strand, within SM_b21051 at 684.477 kb on - strand, within SM_b21051 at 684.477 kb on - strand, within SM_b21051 at 684.477 kb on - strand, within SM_b21051 at 684.478 kb on + strand, within SM_b21051 at 684.479 kb on - strand, within SM_b21051 at 684.588 kb on + strand, within SM_b21051 at 684.589 kb on - strand, within SM_b21051 at 684.589 kb on - strand, within SM_b21051 at 684.600 kb on + strand, within SM_b21051 at 684.600 kb on + strand, within SM_b21051 at 684.664 kb on + strand, within SM_b21051 at 684.664 kb on + strand, within SM_b21051 at 684.665 kb on - strand, within SM_b21051 at 684.665 kb on - strand, within SM_b21051 at 684.773 kb on - strand, within SM_b21051 at 684.867 kb on + strand, within SM_b21051 at 684.867 kb on + strand, within SM_b21051 at 684.868 kb on - strand, within SM_b21051 at 685.077 kb on + strand, within SM_b21051 at 685.077 kb on + strand, within SM_b21051 at 685.077 kb on + strand, within SM_b21051 at 685.077 kb on + strand, within SM_b21051 at 685.078 kb on - strand, within SM_b21051 at 685.166 kb on + strand at 685.167 kb on - strand at 685.187 kb on - strand at 685.200 kb on - strand at 685.277 kb on + strand at 685.278 kb on - strand at 685.278 kb on - strand at 685.427 kb on - strand at 685.572 kb on - strand at 685.709 kb on + strand, within SM_b21052 at 685.710 kb on - strand, within SM_b21052 at 685.745 kb on - strand, within SM_b21052 at 685.788 kb on + strand, within SM_b21052 at 685.789 kb on - strand, within SM_b21052 at 685.878 kb on - strand, within SM_b21052 at 685.935 kb on + strand, within SM_b21052 at 686.022 kb on + strand, within SM_b21052 at 686.023 kb on - strand, within SM_b21052 at 686.053 kb on - strand, within SM_b21052 at 686.056 kb on + strand, within SM_b21052 at 686.056 kb on + strand, within SM_b21052 at 686.057 kb on - strand, within SM_b21052 at 686.057 kb on - strand, within SM_b21052 at 686.057 kb on - strand, within SM_b21052 at 686.064 kb on + strand, within SM_b21052 at 686.064 kb on + strand, within SM_b21052 at 686.065 kb on - strand, within SM_b21052 at 686.065 kb on - strand, within SM_b21052 at 686.115 kb on + strand at 686.115 kb on + strand, within SM_b21052 at 686.115 kb on + strand, within SM_b21052 at 686.116 kb on - strand, within SM_b21052 at 686.116 kb on - strand, within SM_b21052 at 686.116 kb on - strand, within SM_b21052 at 686.118 kb on - strand, within SM_b21052 at 686.227 kb on - strand, within SM_b21052
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 682,929 + SM_b21050 0.45 +0.3 682,990 + SM_b21050 0.49 -0.2 683,108 - SM_b21050 0.57 -0.4 683,108 - -0.0 683,108 - SM_b21050 0.57 -1.3 683,323 + SM_b21050 0.71 +0.2 683,323 + SM_b21050 0.71 +0.2 683,361 + SM_b21050 0.73 -2.2 683,361 + SM_b21050 0.73 +0.2 683,415 + SM_b21050 0.77 +0.2 683,415 + SM_b21050 0.77 -0.1 683,416 - SM_b21050 0.77 -0.0 683,416 - SM_b21050 0.77 +2.0 683,416 - SM_b21050 0.77 +0.1 683,418 - SM_b21050 0.77 -0.1 683,459 + SM_b21050 0.79 -0.0 683,474 - SM_b21050 0.80 -0.1 683,474 - SM_b21050 0.80 +0.2 683,526 + SM_b21050 0.84 -0.1 683,526 + SM_b21050 0.84 -0.3 683,526 + SM_b21050 0.84 -1.8 683,531 - SM_b21050 0.84 -0.5 683,531 - SM_b21050 0.84 +1.5 683,531 - SM_b21050 0.84 -6.1 683,537 + SM_b21050 0.84 -0.7 683,537 + SM_b21050 0.84 +1.5 683,538 - SM_b21050 0.85 +0.8 683,538 - SM_b21050 0.85 -0.6 683,538 - SM_b21050 0.85 +0.4 683,546 + SM_b21050 0.85 +2.2 683,618 + SM_b21050 0.90 -0.7 683,619 - SM_b21050 0.90 +0.1 683,700 + +0.3 683,700 + +0.2 683,700 + -0.4 683,700 + +0.5 683,701 - +2.0 683,701 - -0.1 683,701 - -0.2 683,701 - +1.0 683,701 - -0.7 683,761 + -0.5 683,761 + +0.3 683,761 + +0.2 683,762 - -0.6 683,858 - -0.7 683,858 - +0.8 683,858 - -0.4 683,883 + -0.0 683,884 - -0.6 683,899 + -1.2 683,900 - -1.7 683,930 - +0.2 683,930 - -0.0 683,937 + -0.5 683,938 - +0.1 683,945 + -0.0 683,945 + -0.3 683,946 - -0.4 683,946 - -0.6 684,089 + SM_b21051 0.12 -0.2 684,090 - SM_b21051 0.12 +0.4 684,111 + SM_b21051 0.14 +0.0 684,112 - SM_b21051 0.14 +0.1 684,121 + SM_b21051 0.14 +0.5 684,122 - SM_b21051 0.14 +1.7 684,147 + SM_b21051 0.16 -1.2 684,147 + SM_b21051 0.16 +0.4 684,148 - SM_b21051 0.16 +0.4 684,151 + SM_b21051 0.17 -0.4 684,152 - SM_b21051 0.17 +1.8 684,163 + SM_b21051 0.17 -0.6 684,164 - SM_b21051 0.17 +0.2 684,227 + SM_b21051 0.22 +1.2 684,247 + SM_b21051 0.24 -1.4 684,247 + SM_b21051 0.24 +1.1 684,248 - SM_b21051 0.24 +0.3 684,265 - SM_b21051 0.25 +0.4 684,334 + SM_b21051 0.30 -0.3 684,334 + SM_b21051 0.30 +0.2 684,335 - SM_b21051 0.30 +2.0 684,366 + SM_b21051 0.32 +0.0 684,366 + SM_b21051 0.32 -0.0 684,367 - SM_b21051 0.33 +0.6 684,372 + SM_b21051 0.33 -0.6 684,387 + SM_b21051 0.34 -0.2 684,388 - SM_b21051 0.34 -0.4 684,388 - SM_b21051 0.34 -0.3 684,395 - SM_b21051 0.35 +0.3 684,418 + SM_b21051 0.36 +0.4 684,419 - SM_b21051 0.36 -0.6 684,476 + SM_b21051 0.41 +0.2 684,477 - SM_b21051 0.41 -0.2 684,477 - SM_b21051 0.41 +0.6 684,477 - SM_b21051 0.41 +0.2 684,478 + SM_b21051 0.41 +0.8 684,479 - SM_b21051 0.41 -1.6 684,588 + SM_b21051 0.49 +0.3 684,589 - SM_b21051 0.49 -0.0 684,589 - SM_b21051 0.49 +0.2 684,600 + SM_b21051 0.50 +0.8 684,600 + SM_b21051 0.50 +0.9 684,664 + SM_b21051 0.55 +1.1 684,664 + SM_b21051 0.55 -1.2 684,665 - SM_b21051 0.55 +0.4 684,665 - SM_b21051 0.55 -0.5 684,773 - SM_b21051 0.63 -0.6 684,867 + SM_b21051 0.70 +1.3 684,867 + SM_b21051 0.70 +2.0 684,868 - SM_b21051 0.70 -2.5 685,077 + SM_b21051 0.85 +0.4 685,077 + SM_b21051 0.85 -0.4 685,077 + SM_b21051 0.85 -1.0 685,077 + SM_b21051 0.85 +0.5 685,078 - SM_b21051 0.85 -0.2 685,166 + +0.4 685,167 - +0.6 685,187 - +0.1 685,200 - -0.9 685,277 + +0.1 685,278 - +2.0 685,278 - -0.7 685,427 - +1.0 685,572 - +0.1 685,709 + SM_b21052 0.13 +3.0 685,710 - SM_b21052 0.13 +1.4 685,745 - SM_b21052 0.17 -1.3 685,788 + SM_b21052 0.21 -0.3 685,789 - SM_b21052 0.22 -2.2 685,878 - SM_b21052 0.31 -0.4 685,935 + SM_b21052 0.37 -0.2 686,022 + SM_b21052 0.46 +1.2 686,023 - SM_b21052 0.46 -1.0 686,053 - SM_b21052 0.49 +0.4 686,056 + SM_b21052 0.49 -0.1 686,056 + SM_b21052 0.49 -1.3 686,057 - SM_b21052 0.49 +0.5 686,057 - SM_b21052 0.49 +0.0 686,057 - SM_b21052 0.49 -0.1 686,064 + SM_b21052 0.50 +0.8 686,064 + SM_b21052 0.50 +1.8 686,065 - SM_b21052 0.50 +1.0 686,065 - SM_b21052 0.50 +0.5 686,115 + +0.2 686,115 + SM_b21052 0.55 +3.8 686,115 + SM_b21052 0.55 -0.1 686,116 - SM_b21052 0.55 -0.0 686,116 - SM_b21052 0.55 +2.0 686,116 - SM_b21052 0.55 -1.0 686,118 - SM_b21052 0.56 -0.6 686,227 - SM_b21052 0.67 -0.8
Or see this region's nucleotide sequence