Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20454 and SM_b20455 are separated by 104 nucleotides SM_b20455 and SM_b20456 are separated by 104 nucleotides SM_b20456 and SM_b20457 are separated by 80 nucleotides
SM_b20454: SM_b20454 - hypothetical protein, at 466,834 to 467,253
_b20454
SM_b20455: SM_b20455 - transcriptional regulator, at 467,358 to 467,972
_b20455
SM_b20456: SM_b20456 - dehydrogenasereductase, at 468,077 to 468,823
_b20456
SM_b20457: SM_b20457 - transcriptional regulator transcription regulator protein, at 468,904 to 470,052
_b20457
Position (kb) 468
469 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 467.176 kb on + strand, within SM_b20454 at 467.177 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.183 kb on - strand, within SM_b20454 at 467.190 kb on - strand, within SM_b20454 at 467.213 kb on + strand at 467.213 kb on + strand at 467.214 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.294 kb on - strand at 467.340 kb on + strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.341 kb on - strand at 467.359 kb on + strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.360 kb on - strand at 467.431 kb on + strand, within SM_b20455 at 467.431 kb on + strand, within SM_b20455 at 467.472 kb on + strand, within SM_b20455 at 467.473 kb on - strand, within SM_b20455 at 467.483 kb on - strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.559 kb on + strand, within SM_b20455 at 467.667 kb on - strand, within SM_b20455 at 467.680 kb on + strand, within SM_b20455 at 467.680 kb on + strand, within SM_b20455 at 467.801 kb on - strand, within SM_b20455 at 467.830 kb on + strand, within SM_b20455 at 467.890 kb on + strand, within SM_b20455 at 467.891 kb on - strand, within SM_b20455 at 467.973 kb on - strand at 467.979 kb on + strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 467.980 kb on - strand at 468.021 kb on + strand at 468.022 kb on - strand at 468.191 kb on + strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.192 kb on - strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.342 kb on + strand, within SM_b20456 at 468.343 kb on - strand, within SM_b20456 at 468.424 kb on + strand, within SM_b20456 at 468.425 kb on - strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.545 kb on + strand, within SM_b20456 at 468.546 kb on - strand, within SM_b20456 at 468.716 kb on + strand, within SM_b20456 at 468.718 kb on - strand, within SM_b20456 at 468.858 kb on + strand at 468.858 kb on + strand at 468.859 kb on - strand at 469.099 kb on - strand, within SM_b20457 at 469.161 kb on + strand, within SM_b20457 at 469.162 kb on - strand, within SM_b20457 at 469.163 kb on + strand, within SM_b20457 at 469.163 kb on + strand, within SM_b20457 at 469.164 kb on - strand, within SM_b20457 at 469.164 kb on - strand, within SM_b20457 at 469.199 kb on + strand, within SM_b20457 at 469.278 kb on + strand, within SM_b20457 at 469.278 kb on + strand, within SM_b20457 at 469.279 kb on - strand, within SM_b20457 at 469.279 kb on - strand, within SM_b20457 at 469.280 kb on + strand, within SM_b20457 at 469.280 kb on + strand, within SM_b20457 at 469.281 kb on - strand, within SM_b20457 at 469.373 kb on - strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.440 kb on + strand, within SM_b20457 at 469.441 kb on - strand, within SM_b20457 at 469.442 kb on + strand, within SM_b20457 at 469.442 kb on + strand, within SM_b20457 at 469.443 kb on - strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.529 kb on + strand, within SM_b20457 at 469.577 kb on + strand, within SM_b20457 at 469.727 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.731 kb on + strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457 at 469.732 kb on - strand, within SM_b20457
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 467,176 + SM_b20454 0.81 -0.2 467,177 - SM_b20454 0.82 -0.6 467,183 - SM_b20454 0.83 -0.0 467,183 - SM_b20454 0.83 +2.0 467,190 - SM_b20454 0.85 +0.7 467,213 + +0.2 467,213 + +0.0 467,214 - -1.3 467,294 - +0.8 467,294 - +0.4 467,294 - -1.7 467,340 + +0.7 467,341 - -1.4 467,341 - +0.2 467,341 - +0.1 467,359 + -0.1 467,360 - -0.4 467,360 - +0.4 467,360 - +0.2 467,360 - +1.0 467,431 + SM_b20455 0.12 +0.1 467,431 + SM_b20455 0.12 +0.5 467,472 + SM_b20455 0.19 -0.4 467,473 - SM_b20455 0.19 -2.7 467,483 - SM_b20455 0.20 -0.5 467,559 + SM_b20455 0.33 -1.9 467,559 + SM_b20455 0.33 +0.0 467,559 + SM_b20455 0.33 -1.2 467,667 - SM_b20455 0.50 +1.5 467,680 + SM_b20455 0.52 -0.7 467,680 + SM_b20455 0.52 +0.7 467,801 - SM_b20455 0.72 +1.8 467,830 + SM_b20455 0.77 -0.2 467,890 + SM_b20455 0.87 -1.8 467,891 - SM_b20455 0.87 +1.2 467,973 - -0.2 467,979 + -0.3 467,980 - +0.2 467,980 - -0.4 467,980 - -0.8 467,980 - -0.4 468,021 + +0.2 468,022 - -0.0 468,191 + SM_b20456 0.15 -0.5 468,192 - SM_b20456 0.15 -1.5 468,192 - SM_b20456 0.15 -1.3 468,342 + SM_b20456 0.35 +0.3 468,342 + SM_b20456 0.35 +0.3 468,342 + SM_b20456 0.35 -0.5 468,342 + SM_b20456 0.35 +0.4 468,343 - SM_b20456 0.36 -0.8 468,424 + SM_b20456 0.46 -0.3 468,425 - SM_b20456 0.47 -0.3 468,545 + SM_b20456 0.63 -0.6 468,545 + SM_b20456 0.63 +0.3 468,546 - SM_b20456 0.63 +0.2 468,716 + SM_b20456 0.86 +0.0 468,718 - SM_b20456 0.86 -0.7 468,858 + -0.8 468,858 + -0.5 468,859 - -0.1 469,099 - SM_b20457 0.17 +0.3 469,161 + SM_b20457 0.22 +0.5 469,162 - SM_b20457 0.22 +1.8 469,163 + SM_b20457 0.23 -0.0 469,163 + SM_b20457 0.23 -0.6 469,164 - SM_b20457 0.23 +0.1 469,164 - SM_b20457 0.23 -0.6 469,199 + SM_b20457 0.26 +1.6 469,278 + SM_b20457 0.33 -2.0 469,278 + SM_b20457 0.33 +0.1 469,279 - SM_b20457 0.33 +0.2 469,279 - SM_b20457 0.33 -0.5 469,280 + SM_b20457 0.33 +0.1 469,280 + SM_b20457 0.33 +0.4 469,281 - SM_b20457 0.33 -0.2 469,373 - SM_b20457 0.41 -0.5 469,440 + SM_b20457 0.47 -0.4 469,440 + SM_b20457 0.47 -0.6 469,440 + SM_b20457 0.47 -0.7 469,441 - SM_b20457 0.47 +0.2 469,442 + SM_b20457 0.47 +1.1 469,442 + SM_b20457 0.47 +0.0 469,443 - SM_b20457 0.47 -0.6 469,529 + SM_b20457 0.54 -2.7 469,529 + SM_b20457 0.54 -0.6 469,529 + SM_b20457 0.54 +0.1 469,577 + SM_b20457 0.59 -0.3 469,727 + SM_b20457 0.72 -0.0 469,731 + SM_b20457 0.72 -0.5 469,731 + SM_b20457 0.72 -3.7 469,731 + SM_b20457 0.72 -1.6 469,732 - SM_b20457 0.72 -1.0 469,732 - SM_b20457 0.72 -0.0 469,732 - SM_b20457 0.72 -0.2 469,732 - SM_b20457 0.72 +0.0 469,732 - SM_b20457 0.72 +0.4 469,732 - SM_b20457 0.72 -0.2
Or see this region's nucleotide sequence