Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20433 and SM_b20434 are separated by 44 nucleotides SM_b20434 and SM_b20435 are separated by 19 nucleotides
SM_b20433: SM_b20433 - ectoine utilization protein EutC, at 447,350 to 448,339
_b20433
SM_b20434: SM_b20434 - hydrolasepeptidase, at 448,384 to 449,565
_b20434
SM_b20435: SM_b20435 - hypothetical protein, at 449,585 to 450,580
_b20435
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1
2 at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.531 kb on - strand, within SM_b20433 at 447.956 kb on - strand, within SM_b20433 at 448.085 kb on + strand, within SM_b20433 at 448.086 kb on - strand, within SM_b20433 at 448.322 kb on - strand at 448.421 kb on - strand at 448.537 kb on + strand, within SM_b20434 at 448.537 kb on + strand, within SM_b20434 at 448.537 kb on + strand, within SM_b20434 at 448.538 kb on - strand at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.538 kb on - strand, within SM_b20434 at 448.628 kb on - strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.666 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.699 kb on + strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.700 kb on - strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.765 kb on + strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.766 kb on - strand, within SM_b20434 at 448.808 kb on + strand, within SM_b20434 at 448.885 kb on + strand, within SM_b20434 at 448.985 kb on - strand, within SM_b20434 at 448.995 kb on + strand, within SM_b20434 at 449.143 kb on + strand, within SM_b20434 at 449.144 kb on - strand, within SM_b20434 at 449.235 kb on + strand, within SM_b20434 at 449.317 kb on + strand, within SM_b20434 at 449.318 kb on - strand, within SM_b20434 at 449.366 kb on - strand, within SM_b20434 at 449.768 kb on + strand, within SM_b20435 at 449.768 kb on + strand, within SM_b20435 at 449.768 kb on + strand, within SM_b20435 at 449.858 kb on + strand, within SM_b20435 at 449.966 kb on + strand, within SM_b20435 at 450.294 kb on + strand, within SM_b20435 at 450.338 kb on - strand, within SM_b20435 at 450.438 kb on + strand, within SM_b20435 at 450.439 kb on - strand, within SM_b20435 at 450.439 kb on - strand, within SM_b20435 at 450.517 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 447,531 - SM_b20433 0.18 -1.3 447,531 - SM_b20433 0.18 -1.0 447,531 - SM_b20433 0.18 -1.0 447,956 - SM_b20433 0.61 +0.2 448,085 + SM_b20433 0.74 +0.1 448,086 - SM_b20433 0.74 -1.4 448,322 - -0.6 448,421 - -0.2 448,537 + SM_b20434 0.13 +2.0 448,537 + SM_b20434 0.13 -0.2 448,537 + SM_b20434 0.13 -0.2 448,538 - -1.8 448,538 - SM_b20434 0.13 -1.6 448,538 - SM_b20434 0.13 +1.3 448,538 - SM_b20434 0.13 -0.1 448,538 - SM_b20434 0.13 -0.5 448,538 - SM_b20434 0.13 -0.0 448,628 - SM_b20434 0.21 +1.7 448,666 + SM_b20434 0.24 +0.8 448,666 + SM_b20434 0.24 -0.4 448,699 + SM_b20434 0.27 +0.0 448,699 + SM_b20434 0.27 -0.3 448,700 - SM_b20434 0.27 -0.2 448,700 - SM_b20434 0.27 +0.0 448,765 + SM_b20434 0.32 +0.1 448,765 + SM_b20434 0.32 -0.3 448,765 + SM_b20434 0.32 -1.9 448,765 + SM_b20434 0.32 -0.0 448,766 - SM_b20434 0.32 +0.2 448,766 - SM_b20434 0.32 +0.4 448,766 - SM_b20434 0.32 +0.1 448,808 + SM_b20434 0.36 -1.2 448,885 + SM_b20434 0.42 -1.4 448,985 - SM_b20434 0.51 +0.7 448,995 + SM_b20434 0.52 -0.2 449,143 + SM_b20434 0.64 -0.6 449,144 - SM_b20434 0.64 -0.6 449,235 + SM_b20434 0.72 +0.1 449,317 + SM_b20434 0.79 +1.6 449,318 - SM_b20434 0.79 -0.6 449,366 - SM_b20434 0.83 +0.9 449,768 + SM_b20435 0.18 -0.7 449,768 + SM_b20435 0.18 -0.5 449,768 + SM_b20435 0.18 +0.2 449,858 + SM_b20435 0.27 +0.0 449,966 + SM_b20435 0.38 +1.0 450,294 + SM_b20435 0.71 -0.2 450,338 - SM_b20435 0.76 +0.1 450,438 + SM_b20435 0.86 -0.4 450,439 - SM_b20435 0.86 +1.2 450,439 - SM_b20435 0.86 +0.1 450,517 + -0.8
Or see this region's nucleotide sequence