Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20268

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20267 and SM_b20268 are separated by 14 nucleotidesSM_b20268 and SM_b20269 overlap by 4 nucleotides SM_b20267: SM_b20267 - D-amino acid dehydrogenase, at 271,438 to 272,679 _b20267 SM_b20268: SM_b20268 - hydroxyproline-2-epimerase, at 272,694 to 273,695 _b20268 SM_b20269: SM_b20269 - hypothetical protein, at 273,692 to 275,383 _b20269 Position (kb) 272 273 274Strain fitness (log2 ratio) -1 0 1 2at 271.864 kb on + strand, within SM_b20267at 272.001 kb on + strand, within SM_b20267at 272.045 kb on - strand, within SM_b20267at 272.266 kb on - strand, within SM_b20267at 272.936 kb on - strand, within SM_b20268at 273.075 kb on + strand, within SM_b20268at 273.075 kb on + strand, within SM_b20268at 273.076 kb on - strand, within SM_b20268at 273.076 kb on - strand, within SM_b20268at 273.196 kb on - strand, within SM_b20268at 273.257 kb on + strand, within SM_b20268at 273.750 kb on + strandat 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.293 kb on - strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269at 274.457 kb on + strand, within SM_b20269

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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271,864 + SM_b20267 0.34 -0.2
272,001 + SM_b20267 0.45 -0.4
272,045 - SM_b20267 0.49 -0.5
272,266 - SM_b20267 0.67 +1.8
272,936 - SM_b20268 0.24 +1.0
273,075 + SM_b20268 0.38 -0.4
273,075 + SM_b20268 0.38 +0.0
273,076 - SM_b20268 0.38 -1.1
273,076 - SM_b20268 0.38 -0.5
273,196 - SM_b20268 0.50 +0.6
273,257 + SM_b20268 0.56 -0.1
273,750 + -0.9
274,293 - SM_b20269 0.36 -0.7
274,293 - SM_b20269 0.36 -0.2
274,293 - SM_b20269 0.36 -0.3
274,293 - SM_b20269 0.36 +0.4
274,293 - SM_b20269 0.36 +1.3
274,457 + SM_b20269 0.45 +0.0
274,457 + SM_b20269 0.45 -0.1

Or see this region's nucleotide sequence