Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_842

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_840 and Pf6N2E2_841 are separated by 10 nucleotidesPf6N2E2_841 and Pf6N2E2_842 are separated by 365 nucleotidesPf6N2E2_842 and Pf6N2E2_843 overlap by 4 nucleotides Pf6N2E2_840 - Alcohol dehydrogenase (EC 1.1.1.1), at 985,335 to 986,321 _840 Pf6N2E2_841 - hypothetical protein, at 986,332 to 986,493 _841 Pf6N2E2_842 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 986,859 to 987,566 _842 Pf6N2E2_843 - Phosphoglycolate phosphatase, archaeal type (EC 3.1.3.18), at 987,563 to 989,320 _843 Position (kb) 986 987 988Strain fitness (log2 ratio) -2 -1 0 1 2 3at 985.882 kb on + strand, within Pf6N2E2_840at 985.882 kb on + strand, within Pf6N2E2_840at 985.882 kb on + strand, within Pf6N2E2_840at 985.883 kb on - strand, within Pf6N2E2_840at 986.459 kb on + strand, within Pf6N2E2_841at 986.459 kb on + strand, within Pf6N2E2_841at 986.460 kb on - strand, within Pf6N2E2_841at 986.491 kb on + strandat 986.491 kb on + strandat 986.491 kb on + strandat 986.491 kb on + strandat 986.505 kb on + strandat 986.505 kb on + strandat 986.505 kb on + strandat 986.505 kb on + strandat 986.506 kb on - strandat 986.594 kb on + strandat 986.594 kb on + strandat 986.598 kb on + strandat 986.599 kb on - strandat 986.599 kb on - strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.735 kb on + strandat 986.736 kb on - strandat 986.737 kb on + strandat 986.737 kb on + strandat 986.774 kb on - strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.779 kb on + strandat 986.780 kb on - strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.837 kb on + strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.838 kb on - strandat 986.841 kb on + strandat 986.841 kb on + strandat 986.842 kb on - strandat 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.006 kb on + strand, within Pf6N2E2_842at 987.007 kb on - strand, within Pf6N2E2_842at 987.102 kb on + strand, within Pf6N2E2_842at 987.103 kb on - strand, within Pf6N2E2_842at 987.222 kb on - strand, within Pf6N2E2_842at 987.328 kb on - strand, within Pf6N2E2_842at 987.348 kb on + strand, within Pf6N2E2_842at 987.348 kb on + strand, within Pf6N2E2_842at 987.349 kb on - strand, within Pf6N2E2_842at 987.349 kb on - strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.456 kb on + strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.457 kb on - strand, within Pf6N2E2_842at 987.478 kb on - strand, within Pf6N2E2_842at 987.557 kb on + strandat 987.557 kb on + strandat 987.557 kb on + strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.558 kb on - strandat 987.564 kb on + strandat 987.564 kb on + strandat 987.564 kb on + strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.565 kb on - strandat 987.733 kb on + strandat 987.734 kb on - strandat 987.734 kb on - strandat 987.734 kb on - strandat 987.734 kb on - strandat 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.796 kb on + strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.797 kb on - strand, within Pf6N2E2_843at 987.906 kb on - strand, within Pf6N2E2_843at 987.906 kb on - strand, within Pf6N2E2_843at 987.921 kb on + strand, within Pf6N2E2_843at 987.921 kb on + strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.922 kb on - strand, within Pf6N2E2_843at 987.995 kb on + strand, within Pf6N2E2_843at 987.995 kb on + strand, within Pf6N2E2_843at 987.995 kb on + strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.996 kb on - strand, within Pf6N2E2_843at 987.997 kb on + strand, within Pf6N2E2_843at 987.997 kb on + strand, within Pf6N2E2_843at 987.998 kb on - strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.061 kb on + strand, within Pf6N2E2_843at 988.062 kb on - strand, within Pf6N2E2_843at 988.062 kb on - strand, within Pf6N2E2_843at 988.149 kb on - strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.233 kb on + strand, within Pf6N2E2_843at 988.234 kb on - strand, within Pf6N2E2_843at 988.304 kb on + strand, within Pf6N2E2_843at 988.305 kb on - strand, within Pf6N2E2_843at 988.367 kb on - strand, within Pf6N2E2_843at 988.379 kb on + strand, within Pf6N2E2_843at 988.380 kb on - strand, within Pf6N2E2_843at 988.458 kb on + strand, within Pf6N2E2_843

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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985,882 + Pf6N2E2_840 0.55 +0.5
985,882 + Pf6N2E2_840 0.55 -1.3
985,882 + Pf6N2E2_840 0.55 +0.3
985,883 - Pf6N2E2_840 0.56 -0.1
986,459 + Pf6N2E2_841 0.78 -1.4
986,459 + Pf6N2E2_841 0.78 +0.2
986,460 - Pf6N2E2_841 0.79 -0.9
986,491 + -1.2
986,491 + +0.2
986,491 + +1.4
986,491 + -0.1
986,505 + +0.5
986,505 + -0.5
986,505 + +1.2
986,505 + -1.0
986,506 - +0.4
986,594 + +0.3
986,594 + +0.8
986,598 + +0.1
986,599 - -0.8
986,599 - +0.4
986,735 + -1.1
986,735 + -0.7
986,735 + -0.1
986,735 + -0.6
986,735 + -0.4
986,736 - -0.9
986,737 + +1.1
986,737 + +0.6
986,774 - +0.4
986,779 + +1.3
986,779 + -1.5
986,779 + +1.4
986,779 + +1.1
986,780 - -1.1
986,837 + +0.2
986,837 + +1.5
986,837 + -1.1
986,837 + -0.2
986,838 - +0.7
986,838 - +0.4
986,838 - +0.4
986,838 - +1.7
986,841 + +0.1
986,841 + +1.0
986,842 - +0.2
987,006 + Pf6N2E2_842 0.21 +0.7
987,006 + Pf6N2E2_842 0.21 -0.5
987,006 + Pf6N2E2_842 0.21 +0.4
987,006 + Pf6N2E2_842 0.21 -0.2
987,007 - Pf6N2E2_842 0.21 -1.1
987,102 + Pf6N2E2_842 0.34 -2.2
987,103 - Pf6N2E2_842 0.34 -0.6
987,222 - Pf6N2E2_842 0.51 +1.5
987,328 - Pf6N2E2_842 0.66 -2.6
987,348 + Pf6N2E2_842 0.69 -0.0
987,348 + Pf6N2E2_842 0.69 -1.6
987,349 - Pf6N2E2_842 0.69 -1.4
987,349 - Pf6N2E2_842 0.69 -1.6
987,456 + Pf6N2E2_842 0.84 -0.1
987,456 + Pf6N2E2_842 0.84 +1.5
987,456 + Pf6N2E2_842 0.84 +0.8
987,457 - Pf6N2E2_842 0.84 -1.5
987,457 - Pf6N2E2_842 0.84 +1.0
987,457 - Pf6N2E2_842 0.84 +0.1
987,478 - Pf6N2E2_842 0.87 -0.7
987,557 + -1.3
987,557 + -1.5
987,557 + -0.1
987,558 - +0.5
987,558 - -0.9
987,558 - +2.4
987,558 - +1.4
987,558 - -0.3
987,558 - +0.7
987,564 + +0.1
987,564 + +1.2
987,564 + +0.1
987,565 - +1.0
987,565 - +0.7
987,565 - +1.7
987,565 - +0.4
987,565 - +0.1
987,565 - +1.8
987,733 + +1.2
987,734 - +1.9
987,734 - +1.1
987,734 - +1.0
987,734 - -0.4
987,796 + Pf6N2E2_843 0.13 -1.0
987,796 + Pf6N2E2_843 0.13 -1.1
987,796 + Pf6N2E2_843 0.13 +0.8
987,796 + Pf6N2E2_843 0.13 -0.1
987,796 + Pf6N2E2_843 0.13 -1.1
987,796 + Pf6N2E2_843 0.13 +0.1
987,796 + Pf6N2E2_843 0.13 -0.8
987,796 + Pf6N2E2_843 0.13 +0.8
987,796 + Pf6N2E2_843 0.13 +0.7
987,797 - Pf6N2E2_843 0.13 -1.7
987,797 - Pf6N2E2_843 0.13 +0.8
987,797 - Pf6N2E2_843 0.13 +1.7
987,797 - Pf6N2E2_843 0.13 -0.4
987,797 - Pf6N2E2_843 0.13 -0.6
987,797 - Pf6N2E2_843 0.13 +0.6
987,797 - Pf6N2E2_843 0.13 +0.1
987,906 - Pf6N2E2_843 0.20 +1.5
987,906 - Pf6N2E2_843 0.20 -1.5
987,921 + Pf6N2E2_843 0.20 +1.3
987,921 + Pf6N2E2_843 0.20 -1.0
987,922 - Pf6N2E2_843 0.20 -1.1
987,922 - Pf6N2E2_843 0.20 +1.7
987,922 - Pf6N2E2_843 0.20 -0.0
987,922 - Pf6N2E2_843 0.20 +1.0
987,922 - Pf6N2E2_843 0.20 -0.4
987,922 - Pf6N2E2_843 0.20 -0.5
987,995 + Pf6N2E2_843 0.25 +0.6
987,995 + Pf6N2E2_843 0.25 +0.1
987,995 + Pf6N2E2_843 0.25 +0.2
987,996 - Pf6N2E2_843 0.25 -0.3
987,996 - Pf6N2E2_843 0.25 -2.1
987,996 - Pf6N2E2_843 0.25 +3.5
987,996 - Pf6N2E2_843 0.25 -0.8
987,997 + Pf6N2E2_843 0.25 -0.8
987,997 + Pf6N2E2_843 0.25 +1.2
987,998 - Pf6N2E2_843 0.25 -0.2
988,061 + Pf6N2E2_843 0.28 -0.6
988,061 + Pf6N2E2_843 0.28 -1.2
988,061 + Pf6N2E2_843 0.28 -0.4
988,061 + Pf6N2E2_843 0.28 +0.7
988,062 - Pf6N2E2_843 0.28 -0.3
988,062 - Pf6N2E2_843 0.28 +0.3
988,149 - Pf6N2E2_843 0.33 -2.2
988,233 + Pf6N2E2_843 0.38 +1.6
988,233 + Pf6N2E2_843 0.38 -0.7
988,233 + Pf6N2E2_843 0.38 -0.5
988,233 + Pf6N2E2_843 0.38 +0.3
988,234 - Pf6N2E2_843 0.38 -0.6
988,304 + Pf6N2E2_843 0.42 -0.1
988,305 - Pf6N2E2_843 0.42 -0.7
988,367 - Pf6N2E2_843 0.46 +1.1
988,379 + Pf6N2E2_843 0.46 -0.1
988,380 - Pf6N2E2_843 0.46 +1.3
988,458 + Pf6N2E2_843 0.51 -0.8

Or see this region's nucleotide sequence