Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4700 and Pf6N2E2_4701 are separated by 80 nucleotides Pf6N2E2_4701 and Pf6N2E2_4702 are separated by 15 nucleotides Pf6N2E2_4702 and Pf6N2E2_4703 are separated by 66 nucleotides Pf6N2E2_4703 and Pf6N2E2_4704 are separated by 27 nucleotides
Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245
_4700
Pf6N2E2_4701 - FIG00953113: hypothetical protein, at 5,433,326 to 5,433,856
_4701
Pf6N2E2_4702 - DgcA Dimethylglycine demethylase subunit A, at 5,433,872 to 5,435,932
_4702
Pf6N2E2_4703 - hypothetical protein, at 5,435,999 to 5,436,112
_4703
Pf6N2E2_4704 - Dimethylglycine dehydrogenase (ferredoxin), FeS subunit DgcB (EC 1.5.7.-) (from data) , at 5,436,140 to 5,438,089
_4704
Position (kb)
5433
5434
5435
5436 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5432.968 kb on - strand, within Pf6N2E2_4700 at 5433.070 kb on - strand, within Pf6N2E2_4700 at 5433.270 kb on + strand at 5433.298 kb on + strand at 5433.352 kb on + strand at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.407 kb on + strand, within Pf6N2E2_4701 at 5433.408 kb on - strand, within Pf6N2E2_4701 at 5433.473 kb on + strand, within Pf6N2E2_4701 at 5433.489 kb on - strand, within Pf6N2E2_4701 at 5433.489 kb on - strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.575 kb on + strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.576 kb on - strand, within Pf6N2E2_4701 at 5433.577 kb on + strand, within Pf6N2E2_4701 at 5433.577 kb on + strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.578 kb on - strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.680 kb on + strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.681 kb on - strand, within Pf6N2E2_4701 at 5433.687 kb on - strand, within Pf6N2E2_4701 at 5433.687 kb on - strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.713 kb on + strand, within Pf6N2E2_4701 at 5433.714 kb on - strand, within Pf6N2E2_4701 at 5433.714 kb on - strand, within Pf6N2E2_4701 at 5433.800 kb on + strand, within Pf6N2E2_4701 at 5433.800 kb on + strand, within Pf6N2E2_4701 at 5433.854 kb on + strand at 5433.854 kb on + strand at 5433.959 kb on + strand at 5433.959 kb on + strand at 5433.959 kb on + strand at 5433.960 kb on - strand at 5434.001 kb on + strand at 5434.001 kb on + strand at 5434.002 kb on - strand at 5434.002 kb on - strand at 5434.325 kb on + strand, within Pf6N2E2_4702 at 5434.325 kb on + strand, within Pf6N2E2_4702 at 5434.325 kb on + strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.326 kb on - strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.604 kb on + strand, within Pf6N2E2_4702 at 5434.605 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.608 kb on - strand, within Pf6N2E2_4702 at 5434.700 kb on + strand, within Pf6N2E2_4702 at 5434.701 kb on - strand, within Pf6N2E2_4702 at 5434.820 kb on + strand, within Pf6N2E2_4702 at 5434.821 kb on - strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.928 kb on + strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.929 kb on - strand, within Pf6N2E2_4702 at 5434.947 kb on - strand, within Pf6N2E2_4702 at 5434.947 kb on - strand, within Pf6N2E2_4702 at 5434.997 kb on + strand, within Pf6N2E2_4702 at 5434.997 kb on + strand, within Pf6N2E2_4702 at 5434.997 kb on + strand, within Pf6N2E2_4702 at 5434.998 kb on - strand, within Pf6N2E2_4702 at 5434.998 kb on - strand, within Pf6N2E2_4702 at 5435.201 kb on - strand, within Pf6N2E2_4702 at 5435.290 kb on - strand, within Pf6N2E2_4702 at 5435.290 kb on - strand, within Pf6N2E2_4702 at 5435.432 kb on + strand, within Pf6N2E2_4702 at 5435.432 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.561 kb on + strand, within Pf6N2E2_4702 at 5435.562 kb on - strand, within Pf6N2E2_4702 at 5435.562 kb on - strand, within Pf6N2E2_4702 at 5435.576 kb on + strand, within Pf6N2E2_4702 at 5435.576 kb on + strand, within Pf6N2E2_4702 at 5435.577 kb on - strand, within Pf6N2E2_4702 at 5435.577 kb on - strand, within Pf6N2E2_4702 at 5435.624 kb on + strand, within Pf6N2E2_4702 at 5435.625 kb on - strand, within Pf6N2E2_4702 at 5435.625 kb on - strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.666 kb on + strand, within Pf6N2E2_4702 at 5435.742 kb on - strand at 5435.744 kb on + strand at 5435.745 kb on - strand at 5435.881 kb on + strand at 5435.881 kb on + strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.882 kb on - strand at 5435.884 kb on + strand at 5435.885 kb on - strand at 5435.900 kb on + strand at 5435.901 kb on - strand at 5435.901 kb on - strand at 5435.947 kb on + strand at 5435.947 kb on + strand at 5435.948 kb on - strand at 5435.948 kb on - strand at 5435.948 kb on - strand at 5435.948 kb on - strand at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.083 kb on + strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.084 kb on - strand, within Pf6N2E2_4703 at 5436.139 kb on + strand at 5436.139 kb on + strand at 5436.139 kb on + strand at 5436.139 kb on + strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.140 kb on - strand at 5436.161 kb on - strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.217 kb on + strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.218 kb on - strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.284 kb on + strand at 5436.285 kb on - strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.323 kb on + strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.324 kb on - strand at 5436.476 kb on + strand, within Pf6N2E2_4704 at 5436.477 kb on - strand, within Pf6N2E2_4704 at 5436.477 kb on - strand, within Pf6N2E2_4704
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 5,432,968 - Pf6N2E2_4700 0.72 -2.0 5,433,070 - Pf6N2E2_4700 0.82 +0.7 5,433,270 + -0.0 5,433,298 + -0.3 5,433,352 + +0.2 5,433,407 + Pf6N2E2_4701 0.15 -0.2 5,433,407 + Pf6N2E2_4701 0.15 +0.5 5,433,407 + Pf6N2E2_4701 0.15 -0.5 5,433,408 - Pf6N2E2_4701 0.15 -0.6 5,433,473 + Pf6N2E2_4701 0.28 -0.2 5,433,489 - Pf6N2E2_4701 0.31 -0.0 5,433,489 - Pf6N2E2_4701 0.31 -0.6 5,433,575 + Pf6N2E2_4701 0.47 -0.4 5,433,575 + Pf6N2E2_4701 0.47 -1.5 5,433,575 + Pf6N2E2_4701 0.47 -0.2 5,433,575 + Pf6N2E2_4701 0.47 -1.4 5,433,575 + Pf6N2E2_4701 0.47 +0.4 5,433,575 + Pf6N2E2_4701 0.47 -1.2 5,433,576 - Pf6N2E2_4701 0.47 +0.1 5,433,576 - Pf6N2E2_4701 0.47 +0.0 5,433,576 - Pf6N2E2_4701 0.47 -0.2 5,433,576 - Pf6N2E2_4701 0.47 +0.5 5,433,577 + Pf6N2E2_4701 0.47 -0.1 5,433,577 + Pf6N2E2_4701 0.47 -0.8 5,433,578 - Pf6N2E2_4701 0.47 +0.2 5,433,578 - Pf6N2E2_4701 0.47 -0.4 5,433,578 - Pf6N2E2_4701 0.47 +0.1 5,433,578 - Pf6N2E2_4701 0.47 +1.0 5,433,578 - Pf6N2E2_4701 0.47 -1.2 5,433,578 - Pf6N2E2_4701 0.47 -0.2 5,433,578 - Pf6N2E2_4701 0.47 +1.0 5,433,680 + Pf6N2E2_4701 0.67 +0.2 5,433,680 + Pf6N2E2_4701 0.67 +0.4 5,433,680 + Pf6N2E2_4701 0.67 +0.4 5,433,681 - Pf6N2E2_4701 0.67 -1.9 5,433,681 - Pf6N2E2_4701 0.67 -0.1 5,433,681 - Pf6N2E2_4701 0.67 -0.1 5,433,687 - Pf6N2E2_4701 0.68 -0.3 5,433,687 - Pf6N2E2_4701 0.68 +0.0 5,433,713 + Pf6N2E2_4701 0.73 -0.4 5,433,713 + Pf6N2E2_4701 0.73 +0.1 5,433,713 + Pf6N2E2_4701 0.73 -0.1 5,433,713 + Pf6N2E2_4701 0.73 +0.2 5,433,713 + Pf6N2E2_4701 0.73 -0.7 5,433,714 - Pf6N2E2_4701 0.73 -2.3 5,433,714 - Pf6N2E2_4701 0.73 -0.2 5,433,800 + Pf6N2E2_4701 0.89 +0.0 5,433,800 + Pf6N2E2_4701 0.89 -0.9 5,433,854 + +0.8 5,433,854 + -0.5 5,433,959 + +0.8 5,433,959 + -1.8 5,433,959 + -1.1 5,433,960 - -1.3 5,434,001 + -0.1 5,434,001 + -0.2 5,434,002 - -1.3 5,434,002 - -1.0 5,434,325 + Pf6N2E2_4702 0.22 -0.8 5,434,325 + Pf6N2E2_4702 0.22 -0.5 5,434,325 + Pf6N2E2_4702 0.22 -0.1 5,434,326 - Pf6N2E2_4702 0.22 +0.2 5,434,326 - Pf6N2E2_4702 0.22 +0.3 5,434,326 - Pf6N2E2_4702 0.22 -0.9 5,434,326 - Pf6N2E2_4702 0.22 -0.5 5,434,326 - Pf6N2E2_4702 0.22 +1.1 5,434,604 + Pf6N2E2_4702 0.36 -0.5 5,434,604 + Pf6N2E2_4702 0.36 +0.5 5,434,604 + Pf6N2E2_4702 0.36 -1.0 5,434,604 + Pf6N2E2_4702 0.36 -1.2 5,434,605 - Pf6N2E2_4702 0.36 -1.7 5,434,608 - Pf6N2E2_4702 0.36 -0.8 5,434,608 - Pf6N2E2_4702 0.36 +0.6 5,434,608 - Pf6N2E2_4702 0.36 -0.7 5,434,608 - Pf6N2E2_4702 0.36 -0.3 5,434,608 - Pf6N2E2_4702 0.36 +0.4 5,434,608 - Pf6N2E2_4702 0.36 +2.6 5,434,700 + Pf6N2E2_4702 0.40 -1.3 5,434,701 - Pf6N2E2_4702 0.40 -0.0 5,434,820 + Pf6N2E2_4702 0.46 +0.4 5,434,821 - Pf6N2E2_4702 0.46 -0.1 5,434,928 + Pf6N2E2_4702 0.51 -0.0 5,434,928 + Pf6N2E2_4702 0.51 -0.7 5,434,928 + Pf6N2E2_4702 0.51 -0.9 5,434,928 + Pf6N2E2_4702 0.51 -2.8 5,434,928 + Pf6N2E2_4702 0.51 +0.1 5,434,928 + Pf6N2E2_4702 0.51 +0.3 5,434,928 + Pf6N2E2_4702 0.51 -0.4 5,434,928 + Pf6N2E2_4702 0.51 -1.3 5,434,928 + Pf6N2E2_4702 0.51 -1.4 5,434,928 + Pf6N2E2_4702 0.51 -0.6 5,434,929 - Pf6N2E2_4702 0.51 +0.1 5,434,929 - Pf6N2E2_4702 0.51 -1.7 5,434,929 - Pf6N2E2_4702 0.51 +0.4 5,434,929 - Pf6N2E2_4702 0.51 -0.1 5,434,929 - Pf6N2E2_4702 0.51 -0.9 5,434,947 - Pf6N2E2_4702 0.52 -1.8 5,434,947 - Pf6N2E2_4702 0.52 -3.0 5,434,997 + Pf6N2E2_4702 0.55 +0.3 5,434,997 + Pf6N2E2_4702 0.55 +0.8 5,434,997 + Pf6N2E2_4702 0.55 -0.9 5,434,998 - Pf6N2E2_4702 0.55 -0.4 5,434,998 - Pf6N2E2_4702 0.55 -0.4 5,435,201 - Pf6N2E2_4702 0.64 -0.4 5,435,290 - Pf6N2E2_4702 0.69 +0.8 5,435,290 - Pf6N2E2_4702 0.69 +0.0 5,435,432 + Pf6N2E2_4702 0.76 +0.4 5,435,432 + Pf6N2E2_4702 0.76 +1.1 5,435,561 + Pf6N2E2_4702 0.82 +0.1 5,435,561 + Pf6N2E2_4702 0.82 -1.4 5,435,561 + Pf6N2E2_4702 0.82 +0.1 5,435,561 + Pf6N2E2_4702 0.82 +0.9 5,435,561 + Pf6N2E2_4702 0.82 -0.4 5,435,562 - Pf6N2E2_4702 0.82 +2.2 5,435,562 - Pf6N2E2_4702 0.82 -1.1 5,435,576 + Pf6N2E2_4702 0.83 -0.8 5,435,576 + Pf6N2E2_4702 0.83 -0.7 5,435,577 - Pf6N2E2_4702 0.83 -0.7 5,435,577 - Pf6N2E2_4702 0.83 +0.3 5,435,624 + Pf6N2E2_4702 0.85 +0.5 5,435,625 - Pf6N2E2_4702 0.85 -0.1 5,435,625 - Pf6N2E2_4702 0.85 +0.0 5,435,666 + Pf6N2E2_4702 0.87 -0.0 5,435,666 + Pf6N2E2_4702 0.87 +0.3 5,435,666 + Pf6N2E2_4702 0.87 -0.1 5,435,666 + Pf6N2E2_4702 0.87 -0.3 5,435,742 - -0.9 5,435,744 + +0.5 5,435,745 - -2.7 5,435,881 + +0.4 5,435,881 + +1.1 5,435,882 - +0.1 5,435,882 - -2.1 5,435,882 - +0.9 5,435,882 - -1.1 5,435,882 - +0.7 5,435,882 - +1.1 5,435,882 - -0.1 5,435,884 + +0.1 5,435,885 - +0.9 5,435,900 + +0.8 5,435,901 - +1.3 5,435,901 - +0.5 5,435,947 + +0.2 5,435,947 + -0.5 5,435,948 - +1.1 5,435,948 - -2.3 5,435,948 - -1.0 5,435,948 - -1.3 5,436,083 + Pf6N2E2_4703 0.74 -0.5 5,436,083 + Pf6N2E2_4703 0.74 +0.5 5,436,083 + Pf6N2E2_4703 0.74 +0.2 5,436,083 + Pf6N2E2_4703 0.74 -0.7 5,436,083 + Pf6N2E2_4703 0.74 +0.9 5,436,083 + Pf6N2E2_4703 0.74 -0.0 5,436,083 + Pf6N2E2_4703 0.74 +0.0 5,436,084 - Pf6N2E2_4703 0.75 -0.6 5,436,084 - Pf6N2E2_4703 0.75 +0.5 5,436,084 - Pf6N2E2_4703 0.75 -1.3 5,436,084 - Pf6N2E2_4703 0.75 +1.2 5,436,084 - Pf6N2E2_4703 0.75 -0.9 5,436,139 + -1.6 5,436,139 + -0.8 5,436,139 + +0.4 5,436,139 + -0.7 5,436,140 - -1.2 5,436,140 - -0.8 5,436,140 - +0.3 5,436,140 - +1.0 5,436,140 - -0.3 5,436,140 - +0.7 5,436,161 - -0.7 5,436,217 + +1.0 5,436,217 + +0.5 5,436,217 + -0.3 5,436,217 + -1.6 5,436,217 + -1.2 5,436,217 + -1.5 5,436,218 - -1.6 5,436,218 - +0.4 5,436,218 - -0.4 5,436,218 - +1.4 5,436,218 - +1.0 5,436,218 - -0.2 5,436,218 - +0.7 5,436,218 - -1.3 5,436,218 - -0.2 5,436,284 + -0.5 5,436,284 + -0.5 5,436,284 + -1.1 5,436,284 + +0.5 5,436,284 + -0.6 5,436,284 + -0.4 5,436,284 + +0.3 5,436,285 - +0.7 5,436,323 + +0.4 5,436,323 + -0.1 5,436,323 + -0.1 5,436,323 + +0.1 5,436,323 + -2.1 5,436,323 + +0.8 5,436,324 - -0.4 5,436,324 - +0.6 5,436,324 - -0.9 5,436,324 - -0.9 5,436,324 - +0.6 5,436,324 - +1.1 5,436,324 - -1.2 5,436,476 + Pf6N2E2_4704 0.17 +0.7 5,436,477 - Pf6N2E2_4704 0.17 +0.2 5,436,477 - Pf6N2E2_4704 0.17 +1.2
Or see this region's nucleotide sequence