Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4170 and Pf6N2E2_4171 are separated by 180 nucleotides Pf6N2E2_4171 and Pf6N2E2_4172 are separated by 21 nucleotides Pf6N2E2_4172 and Pf6N2E2_4173 overlap by 1 nucleotides Pf6N2E2_4173 and Pf6N2E2_4174 are separated by 79 nucleotides
Pf6N2E2_4170 - Catalase (EC 1.11.1.6), at 4,851,518 to 4,853,656
_4170
Pf6N2E2_4171 - hypothetical protein, at 4,853,837 to 4,854,037
_4171
Pf6N2E2_4172 - Methionine ABC transporter ATP-binding protein, at 4,854,059 to 4,854,928
_4172
Pf6N2E2_4173 - Methionine ABC transporter permease protein, at 4,854,928 to 4,855,602
_4173
Pf6N2E2_4174 - Methionine ABC transporter substrate-binding protein, at 4,855,682 to 4,856,455
_4174
Position (kb)
4854
4855 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4853.185 kb on + strand, within Pf6N2E2_4170 at 4853.186 kb on - strand, within Pf6N2E2_4170 at 4853.186 kb on - strand, within Pf6N2E2_4170 at 4853.310 kb on - strand, within Pf6N2E2_4170 at 4853.346 kb on + strand, within Pf6N2E2_4170 at 4853.346 kb on + strand, within Pf6N2E2_4170 at 4853.346 kb on + strand, within Pf6N2E2_4170 at 4853.347 kb on - strand, within Pf6N2E2_4170 at 4853.347 kb on - strand, within Pf6N2E2_4170 at 4853.347 kb on - strand, within Pf6N2E2_4170 at 4853.347 kb on - strand, within Pf6N2E2_4170 at 4853.347 kb on - strand, within Pf6N2E2_4170 at 4853.358 kb on + strand, within Pf6N2E2_4170 at 4853.358 kb on + strand, within Pf6N2E2_4170 at 4853.359 kb on - strand, within Pf6N2E2_4170 at 4853.359 kb on - strand, within Pf6N2E2_4170 at 4853.359 kb on - strand, within Pf6N2E2_4170 at 4853.359 kb on - strand, within Pf6N2E2_4170 at 4853.650 kb on + strand at 4853.650 kb on + strand at 4853.746 kb on - strand at 4853.784 kb on + strand at 4853.784 kb on + strand at 4853.785 kb on - strand at 4853.832 kb on - strand at 4853.832 kb on - strand at 4853.838 kb on + strand at 4853.839 kb on - strand at 4853.861 kb on + strand, within Pf6N2E2_4171 at 4853.861 kb on + strand, within Pf6N2E2_4171 at 4853.862 kb on - strand, within Pf6N2E2_4171 at 4853.919 kb on - strand, within Pf6N2E2_4171 at 4853.919 kb on - strand, within Pf6N2E2_4171 at 4853.944 kb on + strand, within Pf6N2E2_4171 at 4853.944 kb on + strand, within Pf6N2E2_4171 at 4854.332 kb on + strand, within Pf6N2E2_4172 at 4854.515 kb on - strand, within Pf6N2E2_4172 at 4854.744 kb on - strand, within Pf6N2E2_4172 at 4854.744 kb on - strand, within Pf6N2E2_4172 at 4854.744 kb on - strand, within Pf6N2E2_4172 at 4854.788 kb on + strand, within Pf6N2E2_4172 at 4854.788 kb on + strand, within Pf6N2E2_4172 at 4854.788 kb on + strand, within Pf6N2E2_4172 at 4854.789 kb on - strand, within Pf6N2E2_4172 at 4854.789 kb on - strand, within Pf6N2E2_4172 at 4854.789 kb on - strand, within Pf6N2E2_4172 at 4854.789 kb on - strand, within Pf6N2E2_4172 at 4855.061 kb on + strand, within Pf6N2E2_4173 at 4855.061 kb on + strand, within Pf6N2E2_4173 at 4855.062 kb on - strand, within Pf6N2E2_4173 at 4855.062 kb on - strand, within Pf6N2E2_4173 at 4855.105 kb on + strand, within Pf6N2E2_4173 at 4855.105 kb on + strand, within Pf6N2E2_4173 at 4855.105 kb on + strand, within Pf6N2E2_4173 at 4855.105 kb on + strand, within Pf6N2E2_4173 at 4855.105 kb on + strand, within Pf6N2E2_4173 at 4855.106 kb on - strand, within Pf6N2E2_4173 at 4855.106 kb on - strand, within Pf6N2E2_4173 at 4855.106 kb on - strand, within Pf6N2E2_4173 at 4855.398 kb on + strand, within Pf6N2E2_4173 at 4855.426 kb on + strand, within Pf6N2E2_4173 at 4855.583 kb on + strand at 4855.601 kb on - strand at 4855.675 kb on + strand at 4855.676 kb on - strand at 4855.676 kb on - strand at 4855.676 kb on - strand at 4855.676 kb on - strand at 4855.692 kb on + strand at 4855.693 kb on - strand at 4855.693 kb on - strand at 4855.693 kb on - strand at 4855.693 kb on - strand at 4855.850 kb on + strand, within Pf6N2E2_4174 at 4855.850 kb on + strand, within Pf6N2E2_4174 at 4855.850 kb on + strand, within Pf6N2E2_4174 at 4855.851 kb on - strand, within Pf6N2E2_4174 at 4855.851 kb on - strand, within Pf6N2E2_4174 at 4855.866 kb on + strand, within Pf6N2E2_4174 at 4855.867 kb on - strand, within Pf6N2E2_4174 at 4855.867 kb on - strand, within Pf6N2E2_4174 at 4855.867 kb on - strand, within Pf6N2E2_4174 at 4855.867 kb on - strand, within Pf6N2E2_4174 at 4855.916 kb on + strand, within Pf6N2E2_4174 at 4855.917 kb on - strand, within Pf6N2E2_4174 at 4855.917 kb on - strand, within Pf6N2E2_4174
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 4,853,185 + Pf6N2E2_4170 0.78 -1.2 4,853,186 - Pf6N2E2_4170 0.78 -1.8 4,853,186 - Pf6N2E2_4170 0.78 +0.2 4,853,310 - Pf6N2E2_4170 0.84 +0.4 4,853,346 + Pf6N2E2_4170 0.85 +0.4 4,853,346 + Pf6N2E2_4170 0.85 -2.5 4,853,346 + Pf6N2E2_4170 0.85 -0.0 4,853,347 - Pf6N2E2_4170 0.86 -0.1 4,853,347 - Pf6N2E2_4170 0.86 +2.5 4,853,347 - Pf6N2E2_4170 0.86 +0.1 4,853,347 - Pf6N2E2_4170 0.86 -0.0 4,853,347 - Pf6N2E2_4170 0.86 +1.4 4,853,358 + Pf6N2E2_4170 0.86 -0.0 4,853,358 + Pf6N2E2_4170 0.86 +0.5 4,853,359 - Pf6N2E2_4170 0.86 +0.6 4,853,359 - Pf6N2E2_4170 0.86 -1.1 4,853,359 - Pf6N2E2_4170 0.86 +1.3 4,853,359 - Pf6N2E2_4170 0.86 +0.6 4,853,650 + +1.6 4,853,650 + -0.2 4,853,746 - +0.7 4,853,784 + +1.2 4,853,784 + +0.8 4,853,785 - -0.7 4,853,832 - -1.7 4,853,832 - -1.2 4,853,838 + -2.3 4,853,839 - -1.5 4,853,861 + Pf6N2E2_4171 0.12 -0.7 4,853,861 + Pf6N2E2_4171 0.12 -0.1 4,853,862 - Pf6N2E2_4171 0.12 -0.4 4,853,919 - Pf6N2E2_4171 0.41 -1.0 4,853,919 - Pf6N2E2_4171 0.41 -2.4 4,853,944 + Pf6N2E2_4171 0.53 -0.9 4,853,944 + Pf6N2E2_4171 0.53 -0.3 4,854,332 + Pf6N2E2_4172 0.31 -2.2 4,854,515 - Pf6N2E2_4172 0.52 -2.2 4,854,744 - Pf6N2E2_4172 0.79 -2.1 4,854,744 - Pf6N2E2_4172 0.79 -1.4 4,854,744 - Pf6N2E2_4172 0.79 -2.2 4,854,788 + Pf6N2E2_4172 0.84 -0.3 4,854,788 + Pf6N2E2_4172 0.84 -1.5 4,854,788 + Pf6N2E2_4172 0.84 -0.3 4,854,789 - Pf6N2E2_4172 0.84 -0.7 4,854,789 - Pf6N2E2_4172 0.84 -2.4 4,854,789 - Pf6N2E2_4172 0.84 -2.5 4,854,789 - Pf6N2E2_4172 0.84 -0.2 4,855,061 + Pf6N2E2_4173 0.20 -2.3 4,855,061 + Pf6N2E2_4173 0.20 -2.2 4,855,062 - Pf6N2E2_4173 0.20 -1.3 4,855,062 - Pf6N2E2_4173 0.20 -2.2 4,855,105 + Pf6N2E2_4173 0.26 -2.0 4,855,105 + Pf6N2E2_4173 0.26 -1.5 4,855,105 + Pf6N2E2_4173 0.26 -1.2 4,855,105 + Pf6N2E2_4173 0.26 -1.2 4,855,105 + Pf6N2E2_4173 0.26 -0.6 4,855,106 - Pf6N2E2_4173 0.26 -1.7 4,855,106 - Pf6N2E2_4173 0.26 -2.3 4,855,106 - Pf6N2E2_4173 0.26 -2.4 4,855,398 + Pf6N2E2_4173 0.70 -2.2 4,855,426 + Pf6N2E2_4173 0.74 -2.0 4,855,583 + +0.6 4,855,601 - +0.3 4,855,675 + -0.3 4,855,676 - +0.2 4,855,676 - +0.9 4,855,676 - -0.3 4,855,676 - -0.2 4,855,692 + +0.8 4,855,693 - +0.2 4,855,693 - +0.5 4,855,693 - +0.9 4,855,693 - -1.1 4,855,850 + Pf6N2E2_4174 0.22 -1.2 4,855,850 + Pf6N2E2_4174 0.22 +1.4 4,855,850 + Pf6N2E2_4174 0.22 -0.0 4,855,851 - Pf6N2E2_4174 0.22 -0.7 4,855,851 - Pf6N2E2_4174 0.22 +0.5 4,855,866 + Pf6N2E2_4174 0.24 +0.6 4,855,867 - Pf6N2E2_4174 0.24 -0.6 4,855,867 - Pf6N2E2_4174 0.24 -0.4 4,855,867 - Pf6N2E2_4174 0.24 +0.8 4,855,867 - Pf6N2E2_4174 0.24 +0.1 4,855,916 + Pf6N2E2_4174 0.30 -1.7 4,855,917 - Pf6N2E2_4174 0.30 +0.0 4,855,917 - Pf6N2E2_4174 0.30 -1.5
Or see this region's nucleotide sequence