Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4112 and Pf6N2E2_4113 are separated by 86 nucleotides Pf6N2E2_4113 and Pf6N2E2_4114 are separated by 122 nucleotides
Pf6N2E2_4112 - NADPH:quinone oxidoreductase 2, at 4,790,694 to 4,791,533
_4112
Pf6N2E2_4113 - Redox-sensing transcriptional regulator QorR, at 4,791,620 to 4,792,030
_4113
Pf6N2E2_4114 - hypothetical protein, at 4,792,153 to 4,792,368
_4114
Position (kb)
4791
4792
4793 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4790.695 kb on + strand at 4790.935 kb on + strand, within Pf6N2E2_4112 at 4790.935 kb on + strand, within Pf6N2E2_4112 at 4790.935 kb on + strand, within Pf6N2E2_4112 at 4790.935 kb on + strand, within Pf6N2E2_4112 at 4790.935 kb on + strand, within Pf6N2E2_4112 at 4790.936 kb on - strand, within Pf6N2E2_4112 at 4790.936 kb on - strand, within Pf6N2E2_4112 at 4790.936 kb on - strand, within Pf6N2E2_4112 at 4790.942 kb on + strand, within Pf6N2E2_4112 at 4790.959 kb on + strand, within Pf6N2E2_4112 at 4790.959 kb on + strand, within Pf6N2E2_4112 at 4790.959 kb on + strand, within Pf6N2E2_4112 at 4791.014 kb on - strand, within Pf6N2E2_4112 at 4791.090 kb on + strand, within Pf6N2E2_4112 at 4791.103 kb on + strand, within Pf6N2E2_4112 at 4791.103 kb on + strand, within Pf6N2E2_4112 at 4791.104 kb on - strand, within Pf6N2E2_4112 at 4791.115 kb on + strand, within Pf6N2E2_4112 at 4791.115 kb on + strand, within Pf6N2E2_4112 at 4791.115 kb on + strand, within Pf6N2E2_4112 at 4791.115 kb on + strand, within Pf6N2E2_4112 at 4791.129 kb on + strand, within Pf6N2E2_4112 at 4791.129 kb on + strand, within Pf6N2E2_4112 at 4791.129 kb on + strand, within Pf6N2E2_4112 at 4791.130 kb on - strand, within Pf6N2E2_4112 at 4791.130 kb on - strand, within Pf6N2E2_4112 at 4791.130 kb on - strand, within Pf6N2E2_4112 at 4791.132 kb on + strand, within Pf6N2E2_4112 at 4791.132 kb on + strand, within Pf6N2E2_4112 at 4791.132 kb on + strand, within Pf6N2E2_4112 at 4791.132 kb on + strand, within Pf6N2E2_4112 at 4791.132 kb on + strand, within Pf6N2E2_4112 at 4791.133 kb on - strand, within Pf6N2E2_4112 at 4791.133 kb on - strand, within Pf6N2E2_4112 at 4791.133 kb on - strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.135 kb on + strand, within Pf6N2E2_4112 at 4791.136 kb on - strand, within Pf6N2E2_4112 at 4791.136 kb on - strand, within Pf6N2E2_4112 at 4791.136 kb on - strand, within Pf6N2E2_4112 at 4791.136 kb on - strand, within Pf6N2E2_4112 at 4791.232 kb on + strand, within Pf6N2E2_4112 at 4791.232 kb on + strand, within Pf6N2E2_4112 at 4791.232 kb on + strand, within Pf6N2E2_4112 at 4791.232 kb on + strand, within Pf6N2E2_4112 at 4791.233 kb on - strand, within Pf6N2E2_4112 at 4791.233 kb on - strand, within Pf6N2E2_4112 at 4791.233 kb on - strand, within Pf6N2E2_4112 at 4791.332 kb on + strand, within Pf6N2E2_4112 at 4791.376 kb on + strand, within Pf6N2E2_4112 at 4791.377 kb on - strand, within Pf6N2E2_4112 at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.540 kb on + strand at 4791.541 kb on - strand at 4791.541 kb on - strand at 4791.541 kb on - strand at 4791.541 kb on - strand at 4791.541 kb on - strand at 4791.572 kb on + strand at 4791.572 kb on + strand at 4791.572 kb on + strand at 4791.572 kb on + strand at 4791.572 kb on + strand at 4791.572 kb on + strand at 4791.573 kb on - strand at 4791.580 kb on + strand at 4791.599 kb on - strand at 4791.599 kb on - strand at 4791.606 kb on + strand at 4791.607 kb on - strand at 4791.613 kb on - strand at 4791.613 kb on - strand at 4791.616 kb on + strand at 4791.616 kb on + strand at 4791.902 kb on + strand, within Pf6N2E2_4113 at 4791.903 kb on - strand, within Pf6N2E2_4113 at 4791.903 kb on - strand, within Pf6N2E2_4113 at 4791.985 kb on + strand, within Pf6N2E2_4113 at 4792.066 kb on + strand at 4792.066 kb on + strand at 4792.067 kb on - strand at 4792.067 kb on - strand at 4792.115 kb on + strand at 4792.116 kb on - strand at 4792.119 kb on + strand at 4792.119 kb on + strand at 4792.119 kb on + strand at 4792.230 kb on + strand, within Pf6N2E2_4114 at 4792.285 kb on + strand, within Pf6N2E2_4114 at 4792.285 kb on + strand, within Pf6N2E2_4114 at 4792.285 kb on + strand, within Pf6N2E2_4114 at 4792.286 kb on - strand, within Pf6N2E2_4114 at 4792.286 kb on - strand, within Pf6N2E2_4114 at 4792.306 kb on + strand, within Pf6N2E2_4114 at 4792.306 kb on + strand, within Pf6N2E2_4114 at 4792.307 kb on - strand, within Pf6N2E2_4114 at 4792.313 kb on + strand, within Pf6N2E2_4114 at 4792.357 kb on + strand at 4792.358 kb on - strand at 4792.359 kb on + strand at 4792.359 kb on + strand at 4792.507 kb on - strand at 4792.510 kb on + strand at 4792.655 kb on - strand at 4792.695 kb on - strand at 4792.695 kb on - strand at 4792.751 kb on - strand at 4792.770 kb on + strand at 4792.842 kb on + strand at 4792.847 kb on + strand at 4792.981 kb on + strand at 4792.984 kb on - strand at 4792.984 kb on - strand at 4792.987 kb on + strand at 4792.987 kb on + strand at 4792.987 kb on + strand at 4792.987 kb on + strand at 4793.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 4,790,695 + -0.2 4,790,935 + Pf6N2E2_4112 0.29 -1.6 4,790,935 + Pf6N2E2_4112 0.29 +0.2 4,790,935 + Pf6N2E2_4112 0.29 +0.1 4,790,935 + Pf6N2E2_4112 0.29 -1.1 4,790,935 + Pf6N2E2_4112 0.29 -0.3 4,790,936 - Pf6N2E2_4112 0.29 +0.1 4,790,936 - Pf6N2E2_4112 0.29 +0.7 4,790,936 - Pf6N2E2_4112 0.29 +0.5 4,790,942 + Pf6N2E2_4112 0.30 +0.7 4,790,959 + Pf6N2E2_4112 0.32 -0.0 4,790,959 + Pf6N2E2_4112 0.32 -0.1 4,790,959 + Pf6N2E2_4112 0.32 +0.8 4,791,014 - Pf6N2E2_4112 0.38 +0.2 4,791,090 + Pf6N2E2_4112 0.47 +0.4 4,791,103 + Pf6N2E2_4112 0.49 -1.3 4,791,103 + Pf6N2E2_4112 0.49 +0.5 4,791,104 - Pf6N2E2_4112 0.49 +0.5 4,791,115 + Pf6N2E2_4112 0.50 +0.4 4,791,115 + Pf6N2E2_4112 0.50 +0.6 4,791,115 + Pf6N2E2_4112 0.50 +0.0 4,791,115 + Pf6N2E2_4112 0.50 -1.1 4,791,129 + Pf6N2E2_4112 0.52 +0.4 4,791,129 + Pf6N2E2_4112 0.52 -1.4 4,791,129 + Pf6N2E2_4112 0.52 -0.6 4,791,130 - Pf6N2E2_4112 0.52 +0.5 4,791,130 - Pf6N2E2_4112 0.52 -0.3 4,791,130 - Pf6N2E2_4112 0.52 -1.3 4,791,132 + Pf6N2E2_4112 0.52 -1.9 4,791,132 + Pf6N2E2_4112 0.52 +1.1 4,791,132 + Pf6N2E2_4112 0.52 +0.4 4,791,132 + Pf6N2E2_4112 0.52 -1.6 4,791,132 + Pf6N2E2_4112 0.52 -0.6 4,791,133 - Pf6N2E2_4112 0.52 +1.1 4,791,133 - Pf6N2E2_4112 0.52 -1.2 4,791,133 - Pf6N2E2_4112 0.52 -1.2 4,791,135 + Pf6N2E2_4112 0.53 -0.3 4,791,135 + Pf6N2E2_4112 0.53 -0.1 4,791,135 + Pf6N2E2_4112 0.53 +0.1 4,791,135 + Pf6N2E2_4112 0.53 -2.0 4,791,135 + Pf6N2E2_4112 0.53 -0.7 4,791,135 + Pf6N2E2_4112 0.53 +0.7 4,791,135 + Pf6N2E2_4112 0.53 +1.2 4,791,135 + Pf6N2E2_4112 0.53 +0.6 4,791,135 + Pf6N2E2_4112 0.53 -0.4 4,791,136 - Pf6N2E2_4112 0.53 -1.4 4,791,136 - Pf6N2E2_4112 0.53 +0.3 4,791,136 - Pf6N2E2_4112 0.53 -0.1 4,791,136 - Pf6N2E2_4112 0.53 +0.4 4,791,232 + Pf6N2E2_4112 0.64 +0.1 4,791,232 + Pf6N2E2_4112 0.64 -0.2 4,791,232 + Pf6N2E2_4112 0.64 -0.1 4,791,232 + Pf6N2E2_4112 0.64 +0.7 4,791,233 - Pf6N2E2_4112 0.64 +0.0 4,791,233 - Pf6N2E2_4112 0.64 -0.3 4,791,233 - Pf6N2E2_4112 0.64 +1.0 4,791,332 + Pf6N2E2_4112 0.76 -1.6 4,791,376 + Pf6N2E2_4112 0.81 -0.5 4,791,377 - Pf6N2E2_4112 0.81 -0.1 4,791,540 + +1.1 4,791,540 + -0.4 4,791,540 + -0.9 4,791,540 + -1.5 4,791,540 + +0.3 4,791,540 + +0.3 4,791,540 + -1.0 4,791,540 + -1.1 4,791,540 + -0.9 4,791,541 - -2.5 4,791,541 - +0.6 4,791,541 - -0.2 4,791,541 - -0.1 4,791,541 - -0.1 4,791,572 + -1.5 4,791,572 + +1.7 4,791,572 + +0.4 4,791,572 + -0.2 4,791,572 + +1.1 4,791,572 + +0.2 4,791,573 - +0.4 4,791,580 + +1.0 4,791,599 - +0.4 4,791,599 - +0.8 4,791,606 + -1.8 4,791,607 - -0.7 4,791,613 - -0.7 4,791,613 - -0.2 4,791,616 + -1.0 4,791,616 + -2.3 4,791,902 + Pf6N2E2_4113 0.69 -0.2 4,791,903 - Pf6N2E2_4113 0.69 -2.6 4,791,903 - Pf6N2E2_4113 0.69 -0.2 4,791,985 + Pf6N2E2_4113 0.89 -1.0 4,792,066 + -0.3 4,792,066 + -1.6 4,792,067 - +0.7 4,792,067 - -0.9 4,792,115 + +0.8 4,792,116 - -0.3 4,792,119 + -0.6 4,792,119 + -1.3 4,792,119 + -0.0 4,792,230 + Pf6N2E2_4114 0.36 +0.5 4,792,285 + Pf6N2E2_4114 0.61 +0.3 4,792,285 + Pf6N2E2_4114 0.61 -1.6 4,792,285 + Pf6N2E2_4114 0.61 +0.7 4,792,286 - Pf6N2E2_4114 0.62 -0.3 4,792,286 - Pf6N2E2_4114 0.62 +1.2 4,792,306 + Pf6N2E2_4114 0.71 +0.6 4,792,306 + Pf6N2E2_4114 0.71 +0.2 4,792,307 - Pf6N2E2_4114 0.71 -0.6 4,792,313 + Pf6N2E2_4114 0.74 -0.6 4,792,357 + +0.1 4,792,358 - +0.5 4,792,359 + +0.2 4,792,359 + -0.4 4,792,507 - +0.1 4,792,510 + +0.4 4,792,655 - -0.8 4,792,695 - +0.7 4,792,695 - +0.0 4,792,751 - -0.4 4,792,770 + +2.8 4,792,842 + -0.5 4,792,847 + -0.8 4,792,981 + -0.2 4,792,984 - +0.7 4,792,984 - -0.9 4,792,987 + -1.0 4,792,987 + +2.1 4,792,987 + -1.1 4,792,987 + -0.8 4,793,029 + +0.7
Or see this region's nucleotide sequence