Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_391 and Pf6N2E2_392 are separated by 21 nucleotides Pf6N2E2_392 and Pf6N2E2_393 are separated by 168 nucleotides Pf6N2E2_393 and Pf6N2E2_394 are separated by 137 nucleotides
Pf6N2E2_391 - hypothetical protein, at 459,443 to 460,921
_391
Pf6N2E2_392 - Transcriptional regulator, at 460,943 to 461,851
_392
Pf6N2E2_393 - hypothetical protein, at 462,020 to 462,145
_393
Pf6N2E2_394 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 462,283 to 463,059
_394
Position (kb) 460
461
462 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 460.310 kb on + strand, within Pf6N2E2_391 at 460.310 kb on + strand, within Pf6N2E2_391 at 460.473 kb on - strand, within Pf6N2E2_391 at 460.668 kb on + strand, within Pf6N2E2_391 at 460.669 kb on - strand, within Pf6N2E2_391 at 460.783 kb on + strand at 460.848 kb on + strand at 460.848 kb on + strand at 460.848 kb on + strand at 460.849 kb on - strand at 460.849 kb on - strand at 460.849 kb on - strand at 461.022 kb on + strand at 461.023 kb on - strand at 461.025 kb on + strand at 461.026 kb on - strand at 461.026 kb on - strand at 461.026 kb on - strand at 461.308 kb on + strand, within Pf6N2E2_392 at 461.313 kb on + strand, within Pf6N2E2_392 at 461.313 kb on + strand, within Pf6N2E2_392 at 461.314 kb on - strand, within Pf6N2E2_392 at 461.314 kb on - strand, within Pf6N2E2_392 at 461.326 kb on - strand, within Pf6N2E2_392 at 461.326 kb on - strand, within Pf6N2E2_392 at 461.350 kb on - strand, within Pf6N2E2_392 at 461.383 kb on + strand, within Pf6N2E2_392 at 461.394 kb on - strand, within Pf6N2E2_392 at 461.477 kb on + strand, within Pf6N2E2_392 at 461.478 kb on - strand, within Pf6N2E2_392 at 461.677 kb on + strand, within Pf6N2E2_392 at 461.686 kb on + strand, within Pf6N2E2_392 at 461.834 kb on + strand at 461.842 kb on + strand at 461.842 kb on + strand at 461.916 kb on + strand at 461.917 kb on - strand at 461.917 kb on - strand at 461.917 kb on - strand at 461.990 kb on + strand at 461.990 kb on + strand at 461.990 kb on + strand at 461.990 kb on + strand at 461.991 kb on - strand at 462.019 kb on - strand at 462.196 kb on + strand at 462.261 kb on + strand at 462.261 kb on + strand at 462.262 kb on - strand at 462.262 kb on - strand at 462.307 kb on - strand at 462.353 kb on + strand at 462.353 kb on + strand at 462.354 kb on - strand at 462.390 kb on + strand, within Pf6N2E2_394 at 462.390 kb on + strand, within Pf6N2E2_394 at 462.390 kb on + strand, within Pf6N2E2_394 at 462.648 kb on + strand, within Pf6N2E2_394 at 462.720 kb on + strand, within Pf6N2E2_394 at 462.721 kb on - strand, within Pf6N2E2_394 at 462.721 kb on - strand, within Pf6N2E2_394 at 462.721 kb on - strand, within Pf6N2E2_394 at 462.731 kb on - strand, within Pf6N2E2_394 at 462.760 kb on + strand, within Pf6N2E2_394 at 462.761 kb on - strand, within Pf6N2E2_394
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 460,310 + Pf6N2E2_391 0.59 -0.8 460,310 + Pf6N2E2_391 0.59 +0.6 460,473 - Pf6N2E2_391 0.70 -0.0 460,668 + Pf6N2E2_391 0.83 +1.0 460,669 - Pf6N2E2_391 0.83 -1.0 460,783 + +1.1 460,848 + +0.1 460,848 + +0.6 460,848 + +0.8 460,849 - +0.2 460,849 - +1.1 460,849 - -0.8 461,022 + -0.3 461,023 - +1.2 461,025 + -0.8 461,026 - -0.1 461,026 - -0.8 461,026 - -0.4 461,308 + Pf6N2E2_392 0.40 -0.1 461,313 + Pf6N2E2_392 0.41 -1.9 461,313 + Pf6N2E2_392 0.41 +1.1 461,314 - Pf6N2E2_392 0.41 -0.9 461,314 - Pf6N2E2_392 0.41 -0.5 461,326 - Pf6N2E2_392 0.42 -2.1 461,326 - Pf6N2E2_392 0.42 -0.3 461,350 - Pf6N2E2_392 0.45 +0.1 461,383 + Pf6N2E2_392 0.48 -0.4 461,394 - Pf6N2E2_392 0.50 +1.2 461,477 + Pf6N2E2_392 0.59 -1.2 461,478 - Pf6N2E2_392 0.59 -0.2 461,677 + Pf6N2E2_392 0.81 -0.8 461,686 + Pf6N2E2_392 0.82 -0.9 461,834 + +0.6 461,842 + -0.1 461,842 + -0.2 461,916 + +0.9 461,917 - +2.1 461,917 - -0.4 461,917 - +0.9 461,990 + +0.3 461,990 + -2.6 461,990 + +0.0 461,990 + -0.4 461,991 - -1.7 462,019 - +1.3 462,196 + +0.2 462,261 + +0.8 462,261 + +0.6 462,262 - +0.0 462,262 - -1.2 462,307 - +1.4 462,353 + +0.3 462,353 + +0.1 462,354 - +0.6 462,390 + Pf6N2E2_394 0.14 -0.2 462,390 + Pf6N2E2_394 0.14 +1.0 462,390 + Pf6N2E2_394 0.14 -0.6 462,648 + Pf6N2E2_394 0.47 -0.3 462,720 + Pf6N2E2_394 0.56 -0.2 462,721 - Pf6N2E2_394 0.56 +0.8 462,721 - Pf6N2E2_394 0.56 +0.8 462,721 - Pf6N2E2_394 0.56 +1.9 462,731 - Pf6N2E2_394 0.58 -0.2 462,760 + Pf6N2E2_394 0.61 +2.8 462,761 - Pf6N2E2_394 0.62 +0.0
Or see this region's nucleotide sequence