Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3724 and Pf6N2E2_3725 overlap by 4 nucleotides Pf6N2E2_3725 and Pf6N2E2_3726 overlap by 4 nucleotides Pf6N2E2_3726 and Pf6N2E2_3727 overlap by 4 nucleotides Pf6N2E2_3727 and Pf6N2E2_3728 overlap by 4 nucleotides
Pf6N2E2_3724 - FIG025233: SAM-dependent methyltransferases, at 4,338,538 to 4,339,266
_3724
Pf6N2E2_3725 - FIG085779: Lipoprotein, at 4,339,263 to 4,339,745
_3725
Pf6N2E2_3726 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,339,742 to 4,340,938
_3726
Pf6N2E2_3727 - 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60), at 4,340,935 to 4,341,402
_3727
Pf6N2E2_3728 - 3-oxoacyl-[ACP] reductase (EC 1.1.1.100), at 4,341,399 to 4,342,127
_3728
Position (kb)
4339
4340
4341 Strain fitness (log2 ratio)
-2
-1
0
1 at 4338.953 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.000 kb on + strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.001 kb on - strand, within Pf6N2E2_3724 at 4339.069 kb on + strand, within Pf6N2E2_3724 at 4339.602 kb on + strand, within Pf6N2E2_3725 at 4339.603 kb on - strand, within Pf6N2E2_3725 at 4339.663 kb on - strand, within Pf6N2E2_3725 at 4339.751 kb on + strand at 4339.752 kb on - strand at 4340.010 kb on - strand, within Pf6N2E2_3726 at 4340.088 kb on - strand, within Pf6N2E2_3726 at 4340.118 kb on - strand, within Pf6N2E2_3726 at 4340.193 kb on - strand, within Pf6N2E2_3726 at 4340.193 kb on - strand, within Pf6N2E2_3726 at 4340.491 kb on + strand, within Pf6N2E2_3726 at 4340.491 kb on + strand, within Pf6N2E2_3726 at 4340.492 kb on - strand, within Pf6N2E2_3726 at 4340.583 kb on - strand, within Pf6N2E2_3726 at 4340.761 kb on + strand, within Pf6N2E2_3726 at 4341.338 kb on + strand, within Pf6N2E2_3727 at 4341.339 kb on - strand, within Pf6N2E2_3727 at 4341.339 kb on - strand, within Pf6N2E2_3727 at 4341.364 kb on + strand at 4341.639 kb on + strand, within Pf6N2E2_3728 at 4341.639 kb on + strand, within Pf6N2E2_3728 at 4341.640 kb on - strand, within Pf6N2E2_3728 at 4341.640 kb on - strand, within Pf6N2E2_3728 at 4341.640 kb on - strand, within Pf6N2E2_3728 at 4341.643 kb on - strand, within Pf6N2E2_3728 at 4341.744 kb on + strand, within Pf6N2E2_3728 at 4341.745 kb on - strand, within Pf6N2E2_3728 at 4341.745 kb on - strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.855 kb on + strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728 at 4341.856 kb on - strand, within Pf6N2E2_3728
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 4,338,953 + Pf6N2E2_3724 0.57 -0.8 4,339,000 + Pf6N2E2_3724 0.63 -0.6 4,339,000 + Pf6N2E2_3724 0.63 +0.7 4,339,000 + Pf6N2E2_3724 0.63 +0.2 4,339,001 - Pf6N2E2_3724 0.64 -0.8 4,339,001 - Pf6N2E2_3724 0.64 -0.6 4,339,069 + Pf6N2E2_3724 0.73 -0.3 4,339,602 + Pf6N2E2_3725 0.70 -0.4 4,339,603 - Pf6N2E2_3725 0.70 -0.1 4,339,663 - Pf6N2E2_3725 0.83 -0.5 4,339,751 + -1.3 4,339,752 - -1.1 4,340,010 - Pf6N2E2_3726 0.22 -0.3 4,340,088 - Pf6N2E2_3726 0.29 -2.2 4,340,118 - Pf6N2E2_3726 0.31 -0.5 4,340,193 - Pf6N2E2_3726 0.38 -1.6 4,340,193 - Pf6N2E2_3726 0.38 -2.3 4,340,491 + Pf6N2E2_3726 0.63 +0.1 4,340,491 + Pf6N2E2_3726 0.63 +0.0 4,340,492 - Pf6N2E2_3726 0.63 -0.2 4,340,583 - Pf6N2E2_3726 0.70 -1.0 4,340,761 + Pf6N2E2_3726 0.85 -0.8 4,341,338 + Pf6N2E2_3727 0.86 -0.3 4,341,339 - Pf6N2E2_3727 0.86 -0.3 4,341,339 - Pf6N2E2_3727 0.86 +0.3 4,341,364 + +0.6 4,341,639 + Pf6N2E2_3728 0.33 -0.5 4,341,639 + Pf6N2E2_3728 0.33 -0.7 4,341,640 - Pf6N2E2_3728 0.33 +0.8 4,341,640 - Pf6N2E2_3728 0.33 +1.2 4,341,640 - Pf6N2E2_3728 0.33 +1.5 4,341,643 - Pf6N2E2_3728 0.33 +0.2 4,341,744 + Pf6N2E2_3728 0.47 -1.3 4,341,745 - Pf6N2E2_3728 0.47 -0.2 4,341,745 - Pf6N2E2_3728 0.47 -1.5 4,341,855 + Pf6N2E2_3728 0.63 -0.5 4,341,855 + Pf6N2E2_3728 0.63 +1.5 4,341,855 + Pf6N2E2_3728 0.63 +1.1 4,341,855 + Pf6N2E2_3728 0.63 -0.2 4,341,855 + Pf6N2E2_3728 0.63 -1.5 4,341,856 - Pf6N2E2_3728 0.63 -0.4 4,341,856 - Pf6N2E2_3728 0.63 -0.1 4,341,856 - Pf6N2E2_3728 0.63 +0.4 4,341,856 - Pf6N2E2_3728 0.63 -0.2 4,341,856 - Pf6N2E2_3728 0.63 -0.7 4,341,856 - Pf6N2E2_3728 0.63 +0.7
Or see this region's nucleotide sequence